| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_5635 |
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| Symbol | |
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| ID | 6182450 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria MC40-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010557 |
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| Strand | - |
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| Start bp | 139969 |
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| End bp | 140976 |
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| Gene Length | 1008 bp |
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| Protein Length | 335 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 641688767 |
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| Product | HrpE/YscL family type III secretion apparatus protein |
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| Protein accession | YP_001815631 |
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| Protein GI | 172064919 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1317] Flagellar biosynthesis/type III secretory pathway protein |
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| TIGRFAM ID | [TIGR02499] type III secretion apparatus protein, HrpE/YscL family |
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Plasmid Coverage information |
| Num covering plasmid clones | 38 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 0.0813541 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGTGATCT GGTTACGTAA TCCGCAGGCC GAAGGCACGG GCCTCGGCGT GGGTGTCGAA
GGCGACGTGC TGCGTCATGC CGATCTCGCG GCGATCGTCG AGATCGATGC GGCGTATGCC
GAGATGCATC GCCAATGCGA CGAGGCGCTG GACGCGGCGC GCGCCCGAGC GCGCATGCTG
CTCGACGATG CGCAGGCCCG CGCGGACGAC CTCGTCGAGC GAGCCATGCG CGAGTTTGCG
CAGGCGGCCG AGCGGGGTTA CGACGACGGC TTGCGTCGAG GGCTGACCAA TTGGCACGAA
CGGGCGGCGG CGGCGCACGC CGAAGCCTGC CGGATCGAGC CCGGGCAGCA GAACCGACTG
GCCGAACTTG TGACGCTTGC CGTGGAGCAG ATCATTGCGT CGGCGGATCC CAAGGCGCTC
TTTGCGCGCG CGGCCGCGAC GGTCGAGCGC ATCGTCGCGG ACGGCAGCCC GATTCATCTG
CGCGTTCATC CGTCGGATCT GGCCGCGGCG AGCGCGGCGT TCGAGGAAGC CGCGTTGGCA
TGGCGCGAGG CCGGGCGCGC CGTGCGGCTG AGCGCCGTGG CCGATGCGGC GCTCGCGCCC
GGCGCGTGCA TCGCCGAAAC CGATCTCGGT GCGATTGACG CGAGCTTGTC GTTGCACCTG
GCCGCGATGC GCGGCGCACT GGCGCGCGCG GTGCGCAGCG TGGCGCCGGC ACCCGGGTGC
GACGCGCCCG ATGCGCGGCC GGAGGGTGAT GCGCAAGTCT CCGACGAACG CGATTTCGGC
GCGTTGGCGG ATGTCGCGGC GCACGCCGGC ACGCCGACCG GCGAGCACGC CATCGGCGCT
GGCGAGGGCC GCGAGGAAGC AGATGAACGC GCTGGCGACG ACGCGGGCGG GAACATCGAC
GTCGAAGAAG GCTGGCAAGA CGGTGGCGCC ATGCAAACGG CGGCCGACCT GCCCGCCGAC
GGTTCGGCCG ACGTCGCGCA TGAAGACGCC GACGCGATGT CCGTCTGA
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| Protein sequence | MVIWLRNPQA EGTGLGVGVE GDVLRHADLA AIVEIDAAYA EMHRQCDEAL DAARARARML
LDDAQARADD LVERAMREFA QAAERGYDDG LRRGLTNWHE RAAAAHAEAC RIEPGQQNRL
AELVTLAVEQ IIASADPKAL FARAAATVER IVADGSPIHL RVHPSDLAAA SAAFEEAALA
WREAGRAVRL SAVADAALAP GACIAETDLG AIDASLSLHL AAMRGALARA VRSVAPAPGC
DAPDARPEGD AQVSDERDFG ALADVAAHAG TPTGEHAIGA GEGREEADER AGDDAGGNID
VEEGWQDGGA MQTAADLPAD GSADVAHEDA DAMSV
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