| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_5632 |
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| Symbol | |
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| ID | 6182447 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria MC40-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010557 |
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| Strand | - |
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| Start bp | 137168 |
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| End bp | 137974 |
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| Gene Length | 807 bp |
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| Protein Length | 268 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 641688764 |
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| Product | type III secretion protein SpaR/YscT/HrcT |
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| Protein accession | YP_001815628 |
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| Protein GI | 172064916 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4791] Type III secretory pathway, component EscT |
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| TIGRFAM ID | [TIGR01401] type III secretion protein SpaR/YscT/HrcT |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 0.030124 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCGAAA TCACCTTTGC ATCGATCGAA TCGAGCCACC AACTGGTCAG GTTTCTGATC
GTGCTCGGCC TTTGCAGCGA GCGATTGATG GTGCTGATGA TGATCTTTCC GCCCACGTCC
GACAACGTCG TGCAGGGCCG CGTGCGCACC GCGCTCGCGC TGCTGTGGGG CAGCTTCGTC
GCCTACGGGC AGCGCGGCCT GCTCGAGCAG GGGGATGCGA CGATACTCGT CGGTATCGGC
CTGAAGGAGG CGCTGATCGG CGTTGGGCTC GGCTTCGCGG CATCGACGGT GTTCTGGGCC
GCGGAAAGCG TCGGCACGTA CGTCGACGAT CTGACCGGCT TCAATCAACT GCAGATGCAG
AACCCGAGCC AGGGGCAGCA GACGTCGCTG ACGTCGACGC TCCTGAGCCA GTTCGCGATT
GCGGCGTTCT GGTGCCTCGG CGGCATGACG TTTCTGCTCG GCGCGATTTA CGAGTCGTAC
ACCTGGTGGC CGCTCGGCAG CCTCGCGCCC GCGGGCGGCT CGGTACTCGA ATCGTTCGTG
CTGTTGAAGA CCGATTCGCT GATGGAAACG GTGGCGAAGC TGGCAACGCC GATGATGCTG
ATGCTGCTGT TGATCGACAT CGGCTTCGGC TTTACGGGAA AGGTATCGCA AAAGCTCGAT
CTGCCGTCGC TCGCGCAGCC CGTGAAGGGC GCGCTTACGA TTCTGATGCT TGCGCTGCTG
GCGGCCATCT TCATCGATCA GGTGCGCGAT CAGCTTTCGC TCGTGGGCGT GGCCGCCGAG
GCACGGGCGA TCGCGGGCGG CAGATAA
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| Protein sequence | MSEITFASIE SSHQLVRFLI VLGLCSERLM VLMMIFPPTS DNVVQGRVRT ALALLWGSFV
AYGQRGLLEQ GDATILVGIG LKEALIGVGL GFAASTVFWA AESVGTYVDD LTGFNQLQMQ
NPSQGQQTSL TSTLLSQFAI AAFWCLGGMT FLLGAIYESY TWWPLGSLAP AGGSVLESFV
LLKTDSLMET VAKLATPMML MLLLIDIGFG FTGKVSQKLD LPSLAQPVKG ALTILMLALL
AAIFIDQVRD QLSLVGVAAE ARAIAGGR
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