| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_5504 |
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| Symbol | |
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| ID | 6181347 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria MC40-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010552 |
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| Strand | - |
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| Start bp | 2756893 |
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| End bp | 2758866 |
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| Gene Length | 1974 bp |
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| Protein Length | 657 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 641685259 |
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| Product | squalene-hopene cyclase |
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| Protein accession | YP_001812164 |
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| Protein GI | 172064513 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG1657] Squalene cyclase |
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| TIGRFAM ID | [TIGR01507] squalene-hopene cyclase
[TIGR01787] squalene/oxidosqualene cyclases |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.209876 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.0256677 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACGATC TCACCGAAAT GGCTACCCTG TCCGCCGGCA CCGTGCCGGC CGGGCTCGAC
GCCGCCGTCG CCAGCGCGAC CGACGCGCTG CTGGCCGCAC AGAACGCGGA CGGCCACTGG
GTCTACGAAC TCGAGGCCGA CTCGACGATT CCCGCCGAAT ACGTGCTGCT CGTCCACTAT
CTCGGCGAGA CGCCGAACCT CGAGCTCGAA CAGAAGATCG GCCGCTATCT GCGCCGCGTC
CAGCAGGCCG ATGGCGGCTG GCCGCTGTTC ACCGACGGCG CGCCGAACAT CAGCGCGAGC
GTGAAGGCTT ATTTCGCGCT GAAGGTGATC GGCGACGACG AGAACGCCGA GCACATGCAG
CGCGCGCGCC GTGCGATCCA CGCGATGGGC GGCGCCGAGA TGTCGAACGT GTTCACGCGG
ATCCAGCTCG CGCTGTACGG TGCGATTCCG TGGCGCGCGG TGCCGATGAT GCCGGTCGAG
ATCATGCTGC TGCCGCAGTG GTTCCCGTTC CACCTGTCGA AGGTGTCGTA CTGGGCGCGT
ACCGTGATCG TGCCGCTGCT GGTGCTCAAC GCGAAGCGTC CGATCGCGAA GAACCCGCGC
GGCGTGCGCA TCGACGAGCT GTTCGTCGAC CCGCCCGTCA ACGCCGGGCT GCTGCCGCGC
CAGGGCCACC AGAGCCCCGG CTGGTTCGCG TTCTTCCGCG TGGTCGACCA TGCGTTGCGC
GCGGCCGACG GCCTGTTCCC GAATTACACG CGCGAACGCG CGATCCGTCA GGCCGTGTCG
TTCGTCGACG AGCGCCTGAA CGGCGAGGAC GGCCTCGGCG CGATCTATCC GGCGATGGCC
AACGCGGTGA TGATGTACGA CGTGCTCGGC TATGCGGAAG ATCATCCGAA CCGCGCGATC
GCGCGCAAGT CGATCGAGAA GCTGCTCGTC GTGCACGGGG ACGAAGCGTA TTGCCAGCCG
TGCCTGTCGC CGGTGTGGGA CACGTCGCTC GCCGCGCATG CGCTGCTCGA GACCGGCGAC
GCGCGCGCCG AGGAGGCCGT GATCCGCGGC CTCGAATGGC TGCGCCCGCT GCAGATCCTC
GACGTGCGCG GCGACTGGAT CTCGCGCCGC CCGCACGTGC GACCCGGCGG CTGGGCGTTC
CAGTACGCGA ACCCGCACTA CCCGGACGTC GACGATACGG CGGTGGTCGC GGTGGCGATG
GATCGCGTGC AGAAACTCAA GCACGACGAC GCGTTTCGCG ATTCGATCGC GCGTGCGCGC
GAGTGGGTCG TCGGGATGCA GAGCAGCGAC GGCGGCTGGG GTGCGTTCGA ACCGGAAAAC
ACGCAGTACT ACCTGAACAA CATCCCGTTC TCGGATCACG GCGCGCTCCT CGATCCGCCG
ACGGCCGACG TGTCGGGCCG CTGCCTGTCG ATGCTGGCGC AGCTCGGCGA GACGCCGCTG
AACAGCGAGC CGGCGCGCCG CGCGCTCGAC TACATGCTGA AGGAGCAGGA GCCGGACGGC
AGCTGGTACG GCCGCTGGGG GATGAACTAC GTGTACGGCA CGTGGACGGC CCTGTGCGCG
TTGAACGCCG CGGGCCTGAC GCCGGACGAT CCGCGCGTGA AGCGCGGCGC GCAGTGGCTG
CTGTCGATCC AGAACAAGGA CGGCGGCTGG GGCGAGGATG GCGACAGCTA CAAGCTGAAC
TATCGCGGTT TCGAGCAGGC GCCGAGCACC GCGTCGCAAA CGGCCTGGGC GCTGCTCGGC
CTGATGGCGG CCGGCGAGGT GAACAATCCG GCCGTCGCGC GCGGCGTCGA GTACCTGCTC
GCCGAGCAGA AGGAACACGG GCTGTGGGAC GAGACGCGCT TCACGGCGAC GGGCTTCCCG
CGCGTGTTCT ATCTGCGCTA CCACGGCTAT CGCAAGTTCT TCCCGCTGTG GGCGCTCGCG
CGCTATCGCA ACCTGAAGCG CAACAACGCC ACGCGCGTGA CGTTCGGGCT GTAA
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| Protein sequence | MNDLTEMATL SAGTVPAGLD AAVASATDAL LAAQNADGHW VYELEADSTI PAEYVLLVHY
LGETPNLELE QKIGRYLRRV QQADGGWPLF TDGAPNISAS VKAYFALKVI GDDENAEHMQ
RARRAIHAMG GAEMSNVFTR IQLALYGAIP WRAVPMMPVE IMLLPQWFPF HLSKVSYWAR
TVIVPLLVLN AKRPIAKNPR GVRIDELFVD PPVNAGLLPR QGHQSPGWFA FFRVVDHALR
AADGLFPNYT RERAIRQAVS FVDERLNGED GLGAIYPAMA NAVMMYDVLG YAEDHPNRAI
ARKSIEKLLV VHGDEAYCQP CLSPVWDTSL AAHALLETGD ARAEEAVIRG LEWLRPLQIL
DVRGDWISRR PHVRPGGWAF QYANPHYPDV DDTAVVAVAM DRVQKLKHDD AFRDSIARAR
EWVVGMQSSD GGWGAFEPEN TQYYLNNIPF SDHGALLDPP TADVSGRCLS MLAQLGETPL
NSEPARRALD YMLKEQEPDG SWYGRWGMNY VYGTWTALCA LNAAGLTPDD PRVKRGAQWL
LSIQNKDGGW GEDGDSYKLN YRGFEQAPST ASQTAWALLG LMAAGEVNNP AVARGVEYLL
AEQKEHGLWD ETRFTATGFP RVFYLRYHGY RKFFPLWALA RYRNLKRNNA TRVTFGL
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