Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | BamMC406_5423 |
Symbol | ispH |
ID | 6180159 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia ambifaria MC40-6 |
Kingdom | Bacteria |
Replicon accession | NC_010552 |
Strand | + |
Start bp | 2667049 |
End bp | 2667990 |
Gene Length | 942 bp |
Protein Length | 313 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 641685178 |
Product | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase |
Protein accession | YP_001812083 |
Protein GI | 172064432 |
COG category | [I] Lipid transport and metabolism [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0761] Penicillin tolerance protein |
TIGRFAM ID | [TIGR00216] (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming) |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 0.586985 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 37 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGCGAGTCA TCCTTGCCCA GCCCCGCGGC TTCTGTGCGG GGGTTGTCCG CGCAATCGAA ATCGTCGATC GCGCGCTGCA ACAGCACGGC GCGCCGGTCT ATGTGCGTCA TGAGATCGTG CATAACCGGC ATGTCGTCGA AAATCTGCGT AATAAAGGGG CACGATTCGT TGAGGAACTC GACGAGGTGC CGCACGGCGC CGTGGCGATC TTCAGCGCGC ACGGTGTCGC CCAGACGGTC GAACGCGACG CCGAAACGCG CGGGCTCGAC GTGCTGGACG CCACCTGCCC GCTCGTCACG AAAGTGCACG TGCAGGGCCG CCAGTACGTT GCTGCGGGCC GCCGGCTGAT CCTGATCGGC CACGCGGGCC ATCCGGAAGT CGAAGGCACG ATCGGCCAGA TTCCTGCCGA GGTGATCCTC GTGCAGAGCG AGGCAGAAGT CGATACGCTG ACGCTGCCGG TCGATACGCC GGTCGCGTAC GTCACGCAGA CCACACTGTC GGTCGACGAC ACGCGCGGCA TCATCGAAGC GCTGCAGCGC CGGTTCACCG ACATCGTCGG CCCGGACACG CGCGACATCT GCTACGCGAC GCAGAACCGC CAGGCCGCCG TGCGCGAGCT GAGCGGCCAG GTCGACGTGC TGCTGGTCGT CGGTGCGACG AACAGCTCGA ACTCGAACCG CCTGCGCGAG ATCGGCACCG AAAGCGGCGT GCCGAGCTAT CTCGTCGCCG ACGGCTCGGA AGTGAAGCCC GAATGGTTCG CGGGCGTGCA GACGGTCGGC CTGACCGCCG GCGCGTCGGC ACCCGAGGAA ATGGTTGAGG ATGTAATCGG CGCGCTGCGC GCGCTGGGGC CCGTCGATGT CACGACGATG GCGGGCCGTG AAGAAAAAGT CGAATTCAAG TTGCCGGCGA AGCTTACGCA AGCTGTCGCC CGCGAAGTTT AA
|
Protein sequence | MRVILAQPRG FCAGVVRAIE IVDRALQQHG APVYVRHEIV HNRHVVENLR NKGARFVEEL DEVPHGAVAI FSAHGVAQTV ERDAETRGLD VLDATCPLVT KVHVQGRQYV AAGRRLILIG HAGHPEVEGT IGQIPAEVIL VQSEAEVDTL TLPVDTPVAY VTQTTLSVDD TRGIIEALQR RFTDIVGPDT RDICYATQNR QAAVRELSGQ VDVLLVVGAT NSSNSNRLRE IGTESGVPSY LVADGSEVKP EWFAGVQTVG LTAGASAPEE MVEDVIGALR ALGPVDVTTM AGREEKVEFK LPAKLTQAVA REV
|
| |