| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_5229 |
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| Symbol | |
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| ID | 6180403 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria MC40-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010552 |
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| Strand | - |
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| Start bp | 2431063 |
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| End bp | 2434263 |
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| Gene Length | 3201 bp |
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| Protein Length | 1066 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 641684985 |
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| Product | hydrophobe/amphiphile efflux-1 (HAE1) family protein |
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| Protein accession | YP_001811890 |
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| Protein GI | 172064239 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0841] Cation/multidrug efflux pump |
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| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.536808 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 30 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATATTT CCAAATTCTT TATCGACCGG CCGATCTTTG CAGGAGTCCT ATCGGTGATC
ATCCTGCTCG GCGGGGTGAT CGCGATGTTC CTGCTGCCGA TTTCGGAGTA TCCGGAAGTC
GTGCCGCCTT CCGTGATCGT GAAGGCGCAA TACCCGGGCG CGAACCCGAA AGTGATCGCC
GAGACGGTCG CGTCGCCGCT GGAAGAGCAG ATCAACGGCG TCGAGGACAT GCTCTACATG
CAGTCGCAGG CGAACAGCGA CGGCAACATG ACGATCACCG TCACGTTCAA GCTCGGCACC
GATCCGGACA AGGCCACGCA GCTCGTGCAG AACCGCGTGA ACCAGGCGCT GCCGCGTCTG
CCGGAAGACG TGCAGCGGCT CGGCATCACC ACGGTGAAGA GCTCGCCGAC GCTGACGATG
GTGGTCCACC TGATCTCGCC GGACAACCGC TACGACATGA CCTACCTGCG CAACTACGCG
CTGATCAACG TGAAGGATCG CCTGTCGCGG ATCCAGGGCG TCGGCCAGGT GCAGCTGTGG
GGTTCGGGCG ACTACGCGAT GCGCGTGTGG CTCGATCCGC AGAAGGTCGC GCAGCGCGGG
CTGTCCGCCG AGGACGTCGT GCAGTCGATC CGCGAGCAGA ACGTGCAGGT CGCGGCCGGC
GTGATCGGCG CGTCGCCGTC GTTGCCGGGC ACGCCGCTGC AGCTGTCGGT GAACGCGCGC
GGCCGTCTGC AGACGGAAGA CGAGTTCGGC GACATCGTCG TGAAGACGAC GCCGGACGGC
GGCGTCACGC ACCTGCGCGA CATCGCGCGA ATCGAGCTCG ACGCGTCCGA GTACGGGCTG
CGCTCGCTGC TCGACAACAA GCCGGCCGTC GCGATGGCGA TCAACCAGTC GCCGGGCGCG
AACTCGCTGC AGATTTCCGA CGAAGTGCGC AAGACGATGG CCGAGCTGAA GCAGGACATG
CCGGCCGGTA TCGACTACAA GATCGTCTAT GACCCGACGC AGTTCGTGCG TTCGTCGATC
AAGGCCGTCG TGCATACGCT GCTCGAGGCG ATCGCGCTGG TCGTGATCGT CGTGATCGTG
TTCCTGCAGA CCTGGCGCGC GTCGCTGATT CCGCTGATCG CGGTGCCGGT GTCGATCATT
GGCACGTTCT CGCTGCTGCT CGGCTTCGGC TATTCGATCA ACGCGTTGTC GTTGTTCGGG
ATGGTGCTCG CGATCGGTAT CGTGGTCGAC GATGCGATCG TGGTGGTCGA GAACGTCGAG
CGCAACATCG AAAGCGGGAT GAACGCGCGG CAGGCGACCT ACAAGGCGAT GCAGGAAGTG
AGCGGGCCGA TCATCGCGAT CGCGCTGACG CTCGTCGCGG TGTTCGTGCC GCTCGCGTTC
ATGTCGGGCC TGACCGGCCA GTTCTACAAG CAGTTCGCGA TGACGATCGC GATCTCGACG
GTGATCTCGG CGTTCAACTC GCTGACGCTG TCGCCGGCGT TGTCCGCGAT CCTGCTGAAG
GGGCATGGCG ACAAGGAGGA CTGGCTCACG CGCGTGATGA ACCGCGTGCT CGGCGGGTTC
TTCAAGCGTT TCAACAAGGT GTTCCATCGC GGCGCGGAGA ACTACGGCCG CGGTGTGCGC
GGCGTGCTGT CGCGCAAGAC GCTGATGCTC GGCGTGTACC TCGTGCTGGT GGGCGCGACC
GTGCTGGTGT CGAAGGTCGT GCCGGGCGGT TTCGTGCCCG CGCAGGACAA GGAATACCTG
ATCGCGTTCG CGCAGCTGCC GAACGGCGCG TCGCTCGACC GCACCGAGAA GGTGATCCGC
GACATGGGCT CGATCGCGCT GAAGCAGCCG GGCGTCGAGA GCGCGGTCGC GTTCCCGGGG
CTGTCGGTGA ACGGCTTCAC GAACAGCTCG AGCGCGGGCA TCGTGTTCGT CACGCTGAAG
CCGTTCTCGG AACGGCACGG CAAGGCGTTG TCGGCCGGCG CGATCGCGGG TGCGCTGAAC
CAGCAGTACG GCGCGATCAA GGACTCGTTC GTCGCGGTGT TCCCGCCGCC GCCGGTGCTC
GGCCTCGGCA CGCTCGGCGG GTTCAAGATG CAGATCGAGG ATCGTGGCGC GGTTGGCTAC
GCGAAGCTGT CGGACGCGAC CAACGACTTC ATCAAGCGCG CGCAGCAGGC GCCTGAACTG
GGCCCGTTGT TTACGAGCTA CCAGATCAAC GTGCCGCAGC TCAACGTCGA TCTCGACCGC
GTGAAGGCGA AGCAGCTCGG CGTGCCGGTC ACCGACGTGT TCAACACGAT GCAGGTGTAT
CTCGGCTCTT TGTACGTGAA CGACTTCAAC CGCTTCGGGC GCGTGTACCA GGTGCGCGTG
CAGGCCGATG CGCCGTTCCG CCAGCGCGCG GACGACATCC TGCAGCTGAA GACGCGTAAC
GACAAGGGCG AGATGGTGCC GCTGTCGTCG CTCGTCACGG TGACGCCGAC GTTCGGCCCG
GAAATGGTCG TGCGCTACAA CGGCTACACG GCGGCCGACA TCAACGGCGG CCCGGCGCCG
GGCTTCTCGT CGGGTCAGGC GCAGGCCGCG GTCGAGCGCA TCGCGCATGA AACGCTGCCA
CGCGGCGTGC GGTTCGAGTG GACCGACCTC ACGTACCAGC AGATTCTTGC GGGCGATTCG
GCGATGTGGG TGTTCCCGAT CAGCGTGCTG CTCGTGTTCC TGGTGCTCGC CGCGCTGTAT
GAAAGCCTGA CGCTGCCGCT CGCGGTGATC CTGATCGTGC CGATGAGCAT TCTGTCGGCG
CTCACAGGCG TGTGGCTCAC GCAGGGCGAC AACAACATCT TCACGCAGAT CGGCTTGATG
GTGCTGGTGG GGCTGTCGGC GAAGAACGCG ATCCTGATCG TTGAATTCGC CCGCGAACTG
GAGCACGACG GCAGGACGCC GCTCGAGGCC GCGATCGAGG CGAGCCGGCT GCGGCTGCGC
CCGATCCTGA TGACGTCGAT CGCATTCATC ATGGGCGTCG TGCCGCTCGT CACGTCGACG
GGCGCGGGCT CGGAGATGCG GCACGCGATG GGTATCGCGG TGTTCTTCGG GATGCTCGGC
GTGACGCTGT TCGGGCTGAT GCTGACGCCG GTGTTCTACG TGGTGCTGCG CACGCTCGCG
GGCGGCAAGA TCCATGTCGC CGGCAAGGAC TCCGCCGGCT ATGGCGTGTC GCCGTCGGGC
GCGTCGGCTA CGGATGCTTG A
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| Protein sequence | MNISKFFIDR PIFAGVLSVI ILLGGVIAMF LLPISEYPEV VPPSVIVKAQ YPGANPKVIA
ETVASPLEEQ INGVEDMLYM QSQANSDGNM TITVTFKLGT DPDKATQLVQ NRVNQALPRL
PEDVQRLGIT TVKSSPTLTM VVHLISPDNR YDMTYLRNYA LINVKDRLSR IQGVGQVQLW
GSGDYAMRVW LDPQKVAQRG LSAEDVVQSI REQNVQVAAG VIGASPSLPG TPLQLSVNAR
GRLQTEDEFG DIVVKTTPDG GVTHLRDIAR IELDASEYGL RSLLDNKPAV AMAINQSPGA
NSLQISDEVR KTMAELKQDM PAGIDYKIVY DPTQFVRSSI KAVVHTLLEA IALVVIVVIV
FLQTWRASLI PLIAVPVSII GTFSLLLGFG YSINALSLFG MVLAIGIVVD DAIVVVENVE
RNIESGMNAR QATYKAMQEV SGPIIAIALT LVAVFVPLAF MSGLTGQFYK QFAMTIAIST
VISAFNSLTL SPALSAILLK GHGDKEDWLT RVMNRVLGGF FKRFNKVFHR GAENYGRGVR
GVLSRKTLML GVYLVLVGAT VLVSKVVPGG FVPAQDKEYL IAFAQLPNGA SLDRTEKVIR
DMGSIALKQP GVESAVAFPG LSVNGFTNSS SAGIVFVTLK PFSERHGKAL SAGAIAGALN
QQYGAIKDSF VAVFPPPPVL GLGTLGGFKM QIEDRGAVGY AKLSDATNDF IKRAQQAPEL
GPLFTSYQIN VPQLNVDLDR VKAKQLGVPV TDVFNTMQVY LGSLYVNDFN RFGRVYQVRV
QADAPFRQRA DDILQLKTRN DKGEMVPLSS LVTVTPTFGP EMVVRYNGYT AADINGGPAP
GFSSGQAQAA VERIAHETLP RGVRFEWTDL TYQQILAGDS AMWVFPISVL LVFLVLAALY
ESLTLPLAVI LIVPMSILSA LTGVWLTQGD NNIFTQIGLM VLVGLSAKNA ILIVEFAREL
EHDGRTPLEA AIEASRLRLR PILMTSIAFI MGVVPLVTST GAGSEMRHAM GIAVFFGMLG
VTLFGLMLTP VFYVVLRTLA GGKIHVAGKD SAGYGVSPSG ASATDA
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