| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_5044 |
|---|
| Symbol | |
|---|
| ID | 6179619 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010552 |
|---|
| Strand | + |
|---|
| Start bp | 2212275 |
|---|
| End bp | 2213045 |
|---|
| Gene Length | 771 bp |
|---|
| Protein Length | 256 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 641684796 |
|---|
| Product | ABC-2 type transporter |
|---|
| Protein accession | YP_001811706 |
|---|
| Protein GI | 172064055 |
|---|
| COG category | [G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1682] ABC-type polysaccharide/polyol phosphate export systems, permease component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 0.917306 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 34 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCGAACT GGAATTTCCA CGGCATCCGC GCGATCTATC GCGCCGAAAT GGCCCGCACG
CGCCGCACGC TGATGCAGAG CATCATCGCG CCGGTGATCT CGACGTCGCT GTACTTCGTC
GTGTTCGGTT CGGCGATCGG CTCGCGCATC AGCGACGTGA ACGGAATCGG CTACGGGTCG
TTCATCGTGC CGGGCCTCGT GATGCTGTCG CTGCTGTCGC AGAGCATCTC GAACGCGTCG
TTCGGCATCT ACTTCCCGCG CTTCACCGGC ACGATCTACG AGATATTGTC CGCGCCCGTG
TCGTACTGGG AGATCGTGAT CGCGTATGTG GGCGCGGCCG CGTCGAAGTC GCTGCTGCTC
GGGGTGATCA TCCTCGCGAC GGCCGGGCTG TTCGTGCCGC TGCACATCCT GCATCCGTTC
TGGATGGTGC TGTTCCTCGT GCTGACGTCG ATCACCTTCA GCCTGTTCGG CTTCGTGATC
GGCATCTGGG CCGACAGCTT CGAGAAGCTG CAGCTCGTGC CGCTCCTGAT CATCACGCCG
CTCACGTTCC TCGGCGGCAG CTTCTATTCG GTCGACATGC TGCCGCCCGC GTGGCGCATC
GTCACGCTGT TCAACCCGAT CGTCTACCTG ATCAGCGGCT TCCGCTGGTC GTTCTACGGG
CTGGCCGACG TGCACGTGGG GATCAGCCTC GCGGCGACCA CGCTGTTCCT CGCGATCCTG
CTCGCGATCG TCGCGTGGAT GTTCCGCACC GGCTACAAGC TGAAGAACTG A
|
|---|
| Protein sequence | MANWNFHGIR AIYRAEMART RRTLMQSIIA PVISTSLYFV VFGSAIGSRI SDVNGIGYGS
FIVPGLVMLS LLSQSISNAS FGIYFPRFTG TIYEILSAPV SYWEIVIAYV GAAASKSLLL
GVIILATAGL FVPLHILHPF WMVLFLVLTS ITFSLFGFVI GIWADSFEKL QLVPLLIITP
LTFLGGSFYS VDMLPPAWRI VTLFNPIVYL ISGFRWSFYG LADVHVGISL AATTLFLAIL
LAIVAWMFRT GYKLKN
|
|---|
| |