Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | BamMC406_4839 |
Symbol | |
ID | 6179878 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia ambifaria MC40-6 |
Kingdom | Bacteria |
Replicon accession | NC_010552 |
Strand | - |
Start bp | 1979013 |
End bp | 1979708 |
Gene Length | 696 bp |
Protein Length | 231 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 641684594 |
Product | polar amino acid ABC transporter, inner membrane subunit |
Protein accession | YP_001811505 |
Protein GI | 172063854 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG4160] ABC-type arginine/histidine transport system, permease component |
TIGRFAM ID | [TIGR01726] amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family |
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Plasmid Coverage information |
Num covering plasmid clones | 27 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 24 |
Fosmid unclonability p-value | 0.337109 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAACGACT TTCTTTCCCT CATCGAGCAG TCCGGCCCGG ACGTCGCGCG CGGCATATGG ATCACGCTCG AGCTGCTGGT GCTGTCATGC ACCCTTGCGT TCGCGCTCGC GGTGCCGCTG GCTGTCGCGC GCACGTCGGC GTACCGGTGG TTGTCGATAC CGAGCCGCCT GTTCATGTCG GTGTTTCGCG GCACGCCGCT GCTGGTGCAG ATTTTCGTGC TGTATTACGG GCTCGCGCAG TTCTCGATCG TGCGTGCGTC GCCTCTGTGG CTGCTGGTCG GCGGATCGTT CTCGTGTGCA TTGTGCGCGC TGACGCTCAA TCTCGCGGCC TACATGGCGG AAGACATCCG GGGCGGGATC GCCGGCGTCC CCGTCGGCGA GAAGGAAGCC GCGCTCGCAT TCGGGATGAG CCGCTTCATG CTCACCTGGT TCGTGATCGT GCCGCGCGCG ATCGGCATCG TCGCACCGAC GCTCGGCAAC GAGATCGTGC TGCAGCTGAA GTCGACCGCG CTTGCCAGCA CGATCACCGT GCTCGACCTG ACCGGTGTCG CGCGACGCAT CTCCATCGAA ACCTATACGA CCGACGCGCT GATGCTGGCC GGCATCGTGT ACGTCGGTAT CACGGCTGTG CTTTCGACCG CGCTCAAACG CGTCGAAGGT CTGCTGAATC GCCATCTGGG CAGCATGCGT GCCTGA
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Protein sequence | MNDFLSLIEQ SGPDVARGIW ITLELLVLSC TLAFALAVPL AVARTSAYRW LSIPSRLFMS VFRGTPLLVQ IFVLYYGLAQ FSIVRASPLW LLVGGSFSCA LCALTLNLAA YMAEDIRGGI AGVPVGEKEA ALAFGMSRFM LTWFVIVPRA IGIVAPTLGN EIVLQLKSTA LASTITVLDL TGVARRISIE TYTTDALMLA GIVYVGITAV LSTALKRVEG LLNRHLGSMR A
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