| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_4818 |
|---|
| Symbol | |
|---|
| ID | 6180593 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010552 |
|---|
| Strand | + |
|---|
| Start bp | 1955575 |
|---|
| End bp | 1958076 |
|---|
| Gene Length | 2502 bp |
|---|
| Protein Length | 833 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 641684574 |
|---|
| Product | L-carnitine dehydratase/bile acid-inducible protein F |
|---|
| Protein accession | YP_001811485 |
|---|
| Protein GI | 172063834 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1804] Predicted acyl-CoA transferases/carnitine dehydratase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 30 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAGCAG CACAAGACAA ACGACCACTC CATGGTGTGA ACGTCATCGA CTTCGGTCAG
TACATCGCGG GACCGGCGGT CGCCATGATC CTCGCCGATC TCGGTGCGAA GGTCATTCAC
ATCGATCCAC CGAACGGCCC GCTTTGGGAC AGCCCTGCCA ATGCGGTGCT GAACCGGAAC
AAGCTCACCG TCAAACTGGA CCTCAAAACA GCCGACGGCG TCGAGCACGC GCTCACGATG
ATCGAGCACG CCGACATCGT AATCGAGAAT TTCCGGCCCG GCGTACTCGC TCGCCTGGGC
ATCGATTTCA CCGCGCTGCG AGCTGCACGA CCAGAACTCA TCACGCTGTC GTTGCCGGGC
TTTGCGAGCA ACGACGAACT GCGGCGCGAA TGGCGAGCAT TCGAACCCAT CATTGCGTCG
GCTTCCGGTG TCTTTACCGA CATGGGCCAG AACCGCGTGC TGATGGGCAT CAACCCGAGT
TTCTCGCCCC TGCCGCTCGC TTCGTCGTAC GGCACCATGC TTGGCGTCTC GTCGGTCGTG
CTCGCGCTTC AGGCGCGCGA GCGCACCGGC CATGGCGATC AGATCGAAGT GCCGCTGTCG
TCGGCCGTGC TCGAAGGGCT GTCCTACAAC TCCATCAAGA TCGACGGCTA TCCGGAGCGC
TACAAAACGC TTCGCGAGAA GGAGGTGGAA CGCCGGCGGG CCAGCGGGCA ATCCATGGAT
CTGTCGTACG AAGCGCTACA GGAATATCTC GACCCGTTCT ATCGCACGTA CGACTGCGCC
GATGGCCGCA AATTCTACGC CGTGTGTCCG TCGCACAATG CCCATGCGAA ACGCTGCCTG
CAGGCGATGG GCATTTACGA TGAAATGGTC GCGGCTGGAC TGCCAGCCGT TGCCGATTGC
TATCGTCCCG TCGATGAATG GGAAGCCGAT GCCTCGCTCG GTGTGTATCC GCTGCCGGCC
CATTGGGCCA GCCGTATTTC GGCGCGCATG AAAGAGGTGT TCCTGACGAA GACGGCCGCC
GAATGGGAGC GCATCTTCGG TGAAGGCGGC TTCCCCGGCG CGCCCCATCG CACCACCAAG
GAATGGCTGC ACGACGAGCA TGCGAATGCC TCGGGACTGG TGGTGACTGC CTACGATCCC
GAATTCGGCT CGATGAAGCA GCCGGGCCCC ATCGCGTGGC TGGAGGACAG CGTCGACGAG
ATGCTGCCCC CCGCACCGCG TTGCGCGGTC ATGGCGAGCG AGGCCATCGC TGTGCTCGCC
GCGTCGCCAC GCGCAAAACC CGCCGCTGCT GCCGGCGAAC CTAGCCAGGG ATGGCTGGAA
GGCGTGAAGA TTCTCGACCT GACGAACGTC ATCGCCGGTC CGCATTCCAC CTCGTTTCTC
GGACGCTTCG GCGCCGACGT GATCAAACTC GACCCGGTGG CGCCGAATTA CGACCCTTGG
AACACGGTGG TGTTCGGGAT GTCGTCCGGT CGCGGAAAAC GAAGCATCCT CGTCGATCTG
AACAACGACG ACGGCAAGGA GGTGTTCCAT CAGCTCGCAC GCTCGGTCGA CGTGATCGTC
ATGAACGCCC CCGATCGGCA GCTCGCTCCA CTCGGCCTCG ACGAGGCCAG CCTGAGGGAA
CTCAACCCGG GCGTCGTGTT CTGTCAGCTC GATTGCTTCG GTGGTCCCCG ACGCGGCCCC
CGGACCGACT ATCTGGGCTA CGACGACTTG ATCCAGGCCT GCACGGGCAT CATGGTCAGG
TTCGGCGGCG GCATGGCGAC GCCAGAAGAA CACGCGCATG TCGGCACCAT CGATGTGATG
TGCGGCTTTG CTGCCGCGCT CGGCGTTGCT GCCGCACTGT ACCGCAAGGC GCGGACTGGC
CAGGGTGGAC GCGCACGCAC GTCCCTGGCG GCGCTCGGTA ACCTCGTGCA GATTCCATAT
TGCTACGACT ACTCGGGCCG CGCACCGTTC GACGAGCCCT CGGGCCGCGA CGCGACCGGG
TTCGGCCCGC TGTCCCGCTT CTTCCGCGCT GCCGATGGGT GGCTTTACAT CCATACCGGG
CCGGACGAGT TCGGCAAGCT CGATCACGTT GAGGGACTGC GCGGCATTGC AGCTTCCGAG
ACCCCGGTTG CGTTTCTCAC ACGCGCCATT GCGTCTGCTC CCGCCGCGCT GTGGCAGACC
CGTCTGCAAG CGGCGAATGT GGCCGCGGCC GTGCCGGACA ACCTCGAGAA CATTCGCCGC
GAGGCCAGCC GCCCTGCCGA CGGTCGCCCC GGCATCGATC TGGGCAGCTT CGCGTTCAGC
GTGTTCGATT CGCATCCCAG CGGCCATCGA GTCACGCAAC TCGATCCCAT CGCGGTGCGG
CCCGCTTCTG CGGCTATCCG CGCACTGTCA CCCGCCGAAA AGTTCGGTGC CTCGACGCGC
GCCGTCATGC GTTCGCTCGG CTACGCGGAA GGCCGCATCG ACTCGCTGAT AGACCAGCGC
GCGATTGGCG TCAGCTGGTC CGACGACTAC CTGCCGCGGT GA
|
|---|
| Protein sequence | MKAAQDKRPL HGVNVIDFGQ YIAGPAVAMI LADLGAKVIH IDPPNGPLWD SPANAVLNRN
KLTVKLDLKT ADGVEHALTM IEHADIVIEN FRPGVLARLG IDFTALRAAR PELITLSLPG
FASNDELRRE WRAFEPIIAS ASGVFTDMGQ NRVLMGINPS FSPLPLASSY GTMLGVSSVV
LALQARERTG HGDQIEVPLS SAVLEGLSYN SIKIDGYPER YKTLREKEVE RRRASGQSMD
LSYEALQEYL DPFYRTYDCA DGRKFYAVCP SHNAHAKRCL QAMGIYDEMV AAGLPAVADC
YRPVDEWEAD ASLGVYPLPA HWASRISARM KEVFLTKTAA EWERIFGEGG FPGAPHRTTK
EWLHDEHANA SGLVVTAYDP EFGSMKQPGP IAWLEDSVDE MLPPAPRCAV MASEAIAVLA
ASPRAKPAAA AGEPSQGWLE GVKILDLTNV IAGPHSTSFL GRFGADVIKL DPVAPNYDPW
NTVVFGMSSG RGKRSILVDL NNDDGKEVFH QLARSVDVIV MNAPDRQLAP LGLDEASLRE
LNPGVVFCQL DCFGGPRRGP RTDYLGYDDL IQACTGIMVR FGGGMATPEE HAHVGTIDVM
CGFAAALGVA AALYRKARTG QGGRARTSLA ALGNLVQIPY CYDYSGRAPF DEPSGRDATG
FGPLSRFFRA ADGWLYIHTG PDEFGKLDHV EGLRGIAASE TPVAFLTRAI ASAPAALWQT
RLQAANVAAA VPDNLENIRR EASRPADGRP GIDLGSFAFS VFDSHPSGHR VTQLDPIAVR
PASAAIRALS PAEKFGASTR AVMRSLGYAE GRIDSLIDQR AIGVSWSDDY LPR
|
|---|
| |