| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_4742 |
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| Symbol | |
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| ID | 6180869 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria MC40-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010552 |
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| Strand | - |
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| Start bp | 1878207 |
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| End bp | 1879016 |
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| Gene Length | 810 bp |
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| Protein Length | 269 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 641684501 |
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| Product | type III secretion protein SpaR/YscT/HrcT |
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| Protein accession | YP_001811412 |
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| Protein GI | 172063761 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4791] Type III secretory pathway, component EscT |
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| TIGRFAM ID | [TIGR01401] type III secretion protein SpaR/YscT/HrcT |
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Plasmid Coverage information |
| Num covering plasmid clones | 29 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 0.795706 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTAGACC ACGCGGCGAA CTTCAACGAC ATCGCCGGCA CGCTGCGCCC GTTGCTCTAC
GTGATGCCGC GCCTGCTGCC GATCATGTTC GTCGTGCCGG TGTTCAACGA GCAGATCATC
ACGGGCCTCG TGCGCAACGG GATCGCGGTC GTGATCGCGG CGTTCGTCGC GCCGGTGATC
GACCCGGCGC AGGTCGCCGC GCTGCCGTTC CTGATGTGGT GCCTGCTTGT CGCGAAGGAG
GCGGTGGTCG GCATGCTGCT CGCGGGTGCG TTCAGCGCGG TGCTGTTCGC GATCCAGGGC
GTCGGCTACC TGATCGATTT CCAGACCGGC AGCGGCAGCG CCGCGTTCTT CGATCCGATG
GGCGGGCACG AAGGCGGCCC GACGTCGGGA TTCCTCAATT TCGTCGCGAT CGCGCTGTTC
GTGACGGCGG GCGGCCTGCA GGTGCTCGTG CAGCTGTTCG CGCAGTCGTA TGCGTGGTGG
CCGATCGGCT CGCTCGGCCC GGACTTCTCG TCGATGCTGG AGACCTTCGT CGTGCGGCAG
ACCGACACGA TCTTCGAATG GATGGTGAAG CTCGCCGCAC CGGTGATCAT CGTGCTGGTG
CTCGTCGAGC TCGGCATCGG CCTGGTCGGC CGCGCGGTGC CGCAGCTGAA CATCTTCGTG
TTCGCGCAGC CGGTGAAGAG CGCGCTCGCG GTGCTGATGA TGGTGCTGTT CCTGCCGGTG
GTGTACGCGT CGCTGCATGC GCTGCTGAGC CCCGACAGCG GGTTGATGGC GCTGCTGCGT
GCGCTGTTCG CCGCGCACGG CGGCGCGTGA
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| Protein sequence | MLDHAANFND IAGTLRPLLY VMPRLLPIMF VVPVFNEQII TGLVRNGIAV VIAAFVAPVI
DPAQVAALPF LMWCLLVAKE AVVGMLLAGA FSAVLFAIQG VGYLIDFQTG SGSAAFFDPM
GGHEGGPTSG FLNFVAIALF VTAGGLQVLV QLFAQSYAWW PIGSLGPDFS SMLETFVVRQ
TDTIFEWMVK LAAPVIIVLV LVELGIGLVG RAVPQLNIFV FAQPVKSALA VLMMVLFLPV
VYASLHALLS PDSGLMALLR ALFAAHGGA
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