| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_4610 |
|---|
| Symbol | |
|---|
| ID | 6179850 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010552 |
|---|
| Strand | - |
|---|
| Start bp | 1715278 |
|---|
| End bp | 1715982 |
|---|
| Gene Length | 705 bp |
|---|
| Protein Length | 234 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 641684370 |
|---|
| Product | short-chain dehydrogenase/reductase SDR |
|---|
| Protein accession | YP_001811281 |
|---|
| Protein GI | 172063630 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 31 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 0.906179 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACTGTAG AGAAAGTGGC TTTGGTGACG GCGGCGGGCA AGGGCATGGG CGCCGCAATC
GCGCGCGACC TCGCGAACAA CGGTTATCGC GTCGCGCTGA TGTCGCCGTC CGGCAGCGCG
GTCGAGCTGG CGCAGGAACT GGGTGGTTTC GGCGTTGCAG GCTCCGTTAC CGAAGACGCC
GACATCGAAC GTTTCGTGAA CGAGACGCTC GCGAAGTACG GCCGTATCGA CGCGGTCGTC
AACAACACCG GACATCCGCC GAAGGGCGAC TTGCTCGCCA TCGAGGACGA CAAGTGGCAC
GAAGGGCTCG ACCTGATCGT GCTCAACGTC GTTCGCGTGC TGCGCCGCGT GACGCCCGTC
TTGCTGAAGC AGGGCGGCGG CGCGGTGGTC AATATTTCGA GCTTCGCGGC GGACGCGCCC
GAGCAGGCGA TGCCGGTGTC GTCCGCGCTG CGCGCGGCGC TGAGTTCGGT CACGCGCCTG
TACGCCGATC GGTATGCGAA GGACAACATT CGCATCAATT CGGTGCTGCC GGGCTTCATC
GACAGCTGGC CGGAGACGCC CGAGATCGTT GCTCGCATTC CGGTCGGCCG TTTCGGCAAG
ACGCAGGAGA TCGCGCAGAC CGTGAGGTTC CTGCTGTCGG ACGGCGCCGG CTATATCACC
GGGCAGAACA TTCGGGTCGA CGGCGGCATC GTGCGCGCGC TGTAA
|
|---|
| Protein sequence | MTVEKVALVT AAGKGMGAAI ARDLANNGYR VALMSPSGSA VELAQELGGF GVAGSVTEDA
DIERFVNETL AKYGRIDAVV NNTGHPPKGD LLAIEDDKWH EGLDLIVLNV VRVLRRVTPV
LLKQGGGAVV NISSFAADAP EQAMPVSSAL RAALSSVTRL YADRYAKDNI RINSVLPGFI
DSWPETPEIV ARIPVGRFGK TQEIAQTVRF LLSDGAGYIT GQNIRVDGGI VRAL
|
|---|
| |