| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_4204 |
|---|
| Symbol | |
|---|
| ID | 6180419 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010552 |
|---|
| Strand | + |
|---|
| Start bp | 1257634 |
|---|
| End bp | 1259151 |
|---|
| Gene Length | 1518 bp |
|---|
| Protein Length | 505 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 641683973 |
|---|
| Product | methylmalonate-semialdehyde dehydrogenase |
|---|
| Protein accession | YP_001810884 |
|---|
| Protein GI | 172063233 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1012] NAD-dependent aldehyde dehydrogenases |
|---|
| TIGRFAM ID | [TIGR01722] methylmalonic acid semialdehyde dehydrogenase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 0.174243 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAACACG ACAGCAATGT GACCTCCACC GTCGGCCACC TGATCGACGG CAAGCGCGTC
GACGGCGGCA GCCGCGTGCA GCCGGTGTTC GACCCGGCGA CCGGCGAATC GCACAAGAGC
GTCGCGCTCG CCGACAAGCT GACCGTCGAA GCCGCGATCG CGTCCGCGCA GGCCGCGTTC
CCCGCGTGGC GCAATACGCC GCCGCTGAAG CGCGCCCGCG TGATGAGCCG CTTCAAGACG
CTGCTCGAGG AGCACGCGGA CGAACTGTGC GCGCTGATCA CCGCCGAGCA CGGCAAGGTG
CTCGCCGACG CGATGGGCGA ACTGCAGCGC GGGATCGAGA ACGTCGAATA CGCGACCTAC
GTGCCCGAGC TGCTGAAGGG CGAGCACAGC AAGAACGTCG GCCCCGCGAT CGATTCGTGG
AGCGAGTTCC AGGCGCTCGG CGTCGCCGCC GGCATCACGC CGTTCAACTT CCCGGTGATG
GTGCCGCTGT GGATGTGGCC GATGGCCGTC GCGTGCGGCA ACACGTTCGT GCTGAAGCCG
TCCGAGCGCA CGCCGTCGTC GACGCTGCGC ATGGCCGAGC TCGCGCTCGA GGCCGGCCTG
CCGCCGGGCG TGCTGAACGT CGTGAACGGC GACAAGGAAG CGGTCGACAC GATCCTGACC
GACGCGCGCG TGAAGGCGGT GAGCTTCGTC GGCTCGACGC CGATCGCCGA ATACATCTAT
TCGACCGGCT GCGCGCACGG CAAGCGCGTG CAGGCGCTCG GCGGCGCGAA GAACTTCGCG
GTGGTGATGC CCGACGCCGA CATCGGCAAC GCGGTGAATG CGCTGATGGG CGCCGCTTAT
GGTTCGTGCG GCGAGCGCTG CATGGCGATC CCGCTGGTCG TCGCGATCGG CGATGAAACG
GGCGACAAGG TGGTCCAAGG GCTGAAGGCC GAGATCGAGA AGATGAAGGT CGGCCCGGGC
AACGGTGCCG GCATCGACAT GGGGCCGCTC GTCACGAAGC AGCATTTCGA CAAGGTAACG
GGCTTCGTCG CAGCAGGCGT GGAAGCGGGC GCGACGCTCG TCGTCGACGG CCGCGGCGTG
AAGGTCGACG GCCACGATGG CGGCTACTAC CTCGGCCCGT GCCTGTTCGA TCACGTGAAG
CCCGGCATGC CGATCTACCA GCACGAGATC TTCGGGCCGG TGCTCGGCGT GATCCGCCTG
AAGTCGCTCG ACGAGGCGAT GGCGCTGATC GACGCGCACG AATACGGCAA CGGCACGTGC
CTGTTCACGC GCGACGGGGA AGCCGCGCGC TACTTCGGCG ACAACATCCA GATCGGCATG
GTCGGCATCA ACGTGCCGCT GCCGGTGCCG GTCGCGTACC ACTCGTTCGG CGGCTGGAAG
CGCTCGCTGT TCGGCGACCT GCACGCGTAC GGCCCGGATG CGGTGCGGTT CTACACGAAG
CGCAAGACGA TCACGCAGCG CTGGCCGTCG GCCGGCGTGC GCGAGGGGAC GGTGTTCAGC
TTCCCGTCGA ACCGCTGA
|
|---|
| Protein sequence | MKHDSNVTST VGHLIDGKRV DGGSRVQPVF DPATGESHKS VALADKLTVE AAIASAQAAF
PAWRNTPPLK RARVMSRFKT LLEEHADELC ALITAEHGKV LADAMGELQR GIENVEYATY
VPELLKGEHS KNVGPAIDSW SEFQALGVAA GITPFNFPVM VPLWMWPMAV ACGNTFVLKP
SERTPSSTLR MAELALEAGL PPGVLNVVNG DKEAVDTILT DARVKAVSFV GSTPIAEYIY
STGCAHGKRV QALGGAKNFA VVMPDADIGN AVNALMGAAY GSCGERCMAI PLVVAIGDET
GDKVVQGLKA EIEKMKVGPG NGAGIDMGPL VTKQHFDKVT GFVAAGVEAG ATLVVDGRGV
KVDGHDGGYY LGPCLFDHVK PGMPIYQHEI FGPVLGVIRL KSLDEAMALI DAHEYGNGTC
LFTRDGEAAR YFGDNIQIGM VGINVPLPVP VAYHSFGGWK RSLFGDLHAY GPDAVRFYTK
RKTITQRWPS AGVREGTVFS FPSNR
|
|---|
| |