| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_4061 |
|---|
| Symbol | |
|---|
| ID | 6179974 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010552 |
|---|
| Strand | + |
|---|
| Start bp | 1084926 |
|---|
| End bp | 1085663 |
|---|
| Gene Length | 738 bp |
|---|
| Protein Length | 245 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 641683831 |
|---|
| Product | helix-turn-helix domain-containing protein |
|---|
| Protein accession | YP_001810742 |
|---|
| Protein GI | 172063091 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 0.859423 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCGAAA CCGCCCAACT CATCGAAACG CTGAAGCGTC AGCTAAAGGC GCAGGGAATG
ACTTATCGCG ACGTCGCGCG GGCGCTCGAC GTGTCCGAGA CGAGCGTGAA GCGGCTGTTC
GCGAGCGGCC GCTTCACGCT GGAGCGCGTC GTGGAGATCG CGCAACTGCT CGGCTATACG
CTCGCCGAAC TCGTGCAGGA GGCGTCGGCA TCCGCGCCGC GCTTGCGCGT GCTGACCGAG
CAGCAGGAGG CGCTGCTCGT GTCGGACGAG AAGCTGCTGC TCGTCGCCGT TTGCGCGGTC
AACTACTGGA CCGTGCAGGA CATCGTGTCG GCCTATTGTC TGACGCAGGC CGAGTGCGTG
AAATACCTGC TGATGCTCGA CCGGATGAAC GTGATCGCGC TGCTGCCCGG CGACCGGATT
CGCGTGCGCG TCGCACGCGA TTTCGATTGG CTGCCGGGCG GGCCGATCCG CCGCTATTTC
CATGCACACG TGCTCGACGA CTTTCTCGGC AGCCGTTTCG ACGGCCCGGG CGAGACGATG
ACGTTCTCGC AAGGGATGCT CACCGACGCG GCCGCCGCGG AACTCGAGCA GGAACTGCGG
CGGCTCGGCG CCAAGGCGGC GGCGCTGCAC GCGGAGTCGT CGTCCGCGCC GCTCGGGCAG
AAGCGCGGCA CGGGGCTGCT CATCGCCAAG CGGATCTGGG AGCCGACCGG CTTCCACGCG
CTGCGGCGCC ATGCGTGA
|
|---|
| Protein sequence | MTETAQLIET LKRQLKAQGM TYRDVARALD VSETSVKRLF ASGRFTLERV VEIAQLLGYT
LAELVQEASA SAPRLRVLTE QQEALLVSDE KLLLVAVCAV NYWTVQDIVS AYCLTQAECV
KYLLMLDRMN VIALLPGDRI RVRVARDFDW LPGGPIRRYF HAHVLDDFLG SRFDGPGETM
TFSQGMLTDA AAAELEQELR RLGAKAAALH AESSSAPLGQ KRGTGLLIAK RIWEPTGFHA
LRRHA
|
|---|
| |