| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_3389 |
|---|
| Symbol | |
|---|
| ID | 6181009 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010552 |
|---|
| Strand | + |
|---|
| Start bp | 307212 |
|---|
| End bp | 311267 |
|---|
| Gene Length | 4056 bp |
|---|
| Protein Length | 1351 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 641683158 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001810072 |
|---|
| Protein GI | 172062421 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 39 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTGACTG AAAGCACCGC AATTCAGCCT CCGAACAGCG CGCAAGGGTT CGAGGATTTT
TGCCACATTG TCTACGGCAC AATATTCAAT GACCCGACAG CGACCAAGAA TGGGCGGTCT
GGACAAAAAC AATATGGAGT GGACGTCTTT GTAAGAGCCG GGGAGCGTCG CGTTGGGATT
CAGTGTAAAC AGAAATCATT TGCGAAGCTG ACCCAAAAAA TCATTGACGA GGAAGTGGCT
GCCGCCGACA AGGGACTCGT TGAGAAACGT CTCGCCGCGA TAAGCGAACT CATCATCGCG
ACGACCGCCG CGAACGATGC AAAGCTGATT GCGTACGCCG CTAAACTTAC AGACGAACGT
AAGCAAGAGG GCAAATTCTC AGTCAATCTA GCGTTCTGGG ATACGCTCCA GGTGCTTGTC
AAGAGCAATC CGTCGCTGCA ATGGCAGTAC GCCCCGCACA TGGCCGGCGG CGCCATTTTC
GAGTTCTCCC GCAAGCAGGA TGAAATATCG CGGAAGCTGG ATGACCATCG GGAAGTGCTC
CAAGTCGTGG CGGCAGCCAC CACCGCGGCC GCGTCAAATG GACGGGTATC AACCAACTCG
ATTCCAGATG CGCGCCTCGA TTCGCTTGAC AAGCTCGTAG ACAGCCAGCT TGACGGCGTC
AAGAAGATGC TAATGGAGGG TCGTTTTACT GCCGCGCTAG AGTCACTTAC ATCTCTTGGG
CAGAACCTTG GTGCCTTCGA TATCTACCAG CGGTCCCGGT GGTTTAGCCA GCGTGCTCAT
TGCTATTGGC AGCAAGAATC CCTCGAGTTT GCCGCCAAAG ATTTTGATAG CGCCTACGGC
CTAACTCCTG CCGATGACAA GACCGCGAGC AACCACATTC GAAGTGCTCT GCTGCGTCAA
CAGTATGACC GTGCCCTGGA GTTGGCCAGT GAGGCACGTC TCGCCTTTCC CGCGTCGGCC
AACGTTTTTA ACGTCTGGGC CGAAGCGGCG GAGCGCTGTG GCAAACGCCC AGTCTGGGAG
CACGACGTTC CGCCTGAATT CCGCGACGAT GCGGACGTCC TGCATGTCTT CGGTTGGCAA
GCACTTCTCG CCGGAGAACT TTCTGTAGCT GCGGAATTTT CAAAGAAGGT CGCTGACAAG
GGCGCGCCAA CGTTTGAACA AGCTAGTTTG CGCCTGCTCA CATTGGTAAA CATGGCAACG
GCCAATGGCG TCTTTGCCGG CGCCGGGATT GTTTCCGAGC AAACGCTGCA TGAACTGGCC
GAGACGTTAC AGTTTTTCGA ACCCGTCGAT AAGCACATCT GGAACCGTCA GGGCGGACTG
TCGACAGCAA TGACCGTCGC CTGCATTGGG TACGCATACC TAATGACAGG CAAGCCGGAA
GAGGCGAAGA AATTTCTACT GAAAGGTGTG CAGTGCTTTC CCGCTGAAGG ACAACTCGCG
CGCATCTGTC TGGAGGCAAT AGTCAAAGCC GACGGCAATA TCACTGCTGG CTACAAGTTC
GGCTCCGAAC ATGTCGAGGT CCTCGACGAA CAGGGACAAA TGATGGTCGC CGAAATGGCG
GCCGAGACTG GCGACATCGC GACATTGGAG CGTATCAGTA CGATTCTTCG TGAGCGCAAT
ACAAATGACG TGGAATGCGA CGAAGAGCTG CGGGCATTCG AATGGCTTGC TCTCCTAGCC
AGCGGAAACG ACGAGCAGCT TGACGCAGTT TTAACGTTCG ATGCTTTTAG CTCCATGACA
TCGAAGGTAG CGAAAGTCAT CGTCGCGAAT ATTGCATTTC GACGAAAGGC AACTTGGGCA
ATCGACGCAG TGCAGTCGCT CGAGAAAGCC TTGCATGACG AAAGCCCGAC GCGTGAAGTC
ATCATGGTAT CCCGCGCCTG TATTGCAGTT GGCCTCTATA GCGAAGCTGC CAAGCGGCTC
GGCAAGATAC TCCCGCGAGG CATCGTAAGC GAGCCTCACA AGCTATTGTT CGAAGCGTTG
GTAAAAGGTG GTTCTCGGCG GAAAGCACTG CGAATGCTCG AGGAGTTCCC CCCAACTGCT
ATCGATGATG CCGATATTCG CGCATTAGCG CTGGAGTTGG CGGAAGGCGC CAACGATTGG
ACGGAACTAT CGCGGCTCAG TGACCTTCAA TTGAAGGCGA ACCCCGGGCA TGCTGAGGCC
TGGACTTTCC GGGCCGCGGT ACTGTTACGC CAGCGCCAAC CCCAAGCGGT ACAACGCCTC
ATCCGAGAGC AAATTCCGTT GGACCTACAA GGCTCAACGA AGAGCCGTGC GCAATTAGCC
AGATTTGAAA TCGAGTTCGG CAATCCGGAG CGCGGCTTCA AGCGCCTATA TCAAGTATTT
CGCCGCTCAC TTGCCGACGT GGATGTGGCA AGCATCTATC TTGGCAACGT CCTTACCATG
CAGCCGGAAC GGCGCCCGAG CAAACCTCTG GGCGTTGGTC CCGCCACGGC AGTCACGTTA
TCAGTCGGCA ACACAACGCG TCAGCTCATC ATCGACCCAG CCGACCTGAC TGATTTGCCC
AAGGCGGCTC ACTTCATATC GGTTTCGGAC CCGACCTACG CCGTACTCGA AGGCAAAATG
TTGGGCGACG CCATTCAACT TGTGGATGGA CTAGGAATCG CTCACGACTA TACCGTCGTC
GACATCAATT CCGGGTATAT GGCTCTCGCT GCACACGCCG AGAAACTTGT TCGCGAGTCG
GTCGTCCCCG GTGGACCAAT AACGTCCATC GAAATGCAGA CGCGCGAGGA CGGTCAGCTC
GACCTTAGCC TGATGCAATC GATGCTTCGA GCACGCACCG AACGAATAAA GCTAGCGCTT
GACGGATACG CCCAAGGTCA AGCCACCATC GGAGTCGTTG CCAAGCTCCT CGGAGTGTCC
CCTCTCGTCA TGGCTGCTGA CTGGCCTGCA GAGCCCGGGC CAAAACTCTA CGCCTGTAGC
GGAGTCTTCG AGGAACAGGC CGCTTCTGAG GAATTACTCA AGTCATGGGA GGGACCGCTC
GTCGTGGACT TGACTGCCAT AAACGAATTA GTCGTAAACG GCATGGAGTC AGCACTCTCG
CTAGTTAAGC CGGTGTACAT ATCTACCTCC TCGGTAGAAG TGCTTGATAG GCTCATCGAG
GTCGCGGCCA CCGATAGAGC GGTAGGCCAT ATGAGCGAGA CGAACGGGCA GATTACGATG
GTTCATTATG GAGAGGGTTA TCACGAAGGG CGTAGAGCCT ATCTCGAGAA GCTTCGCAAG
TGCGTCGACG AGCATTGCGA AATCGCTCCG TCCTGGGGCG CCGAGGAGTT ACCTGAAGGC
CTTCCCCGCT TCGCGGAGGT GCTGGATAGC GAGTCCTACG ACACGCTACT TCTCTGCCTG
GAAAAACAGG CGCTGCTGTT GACGCTAGAT GGCCGGCTGC GCGAGCTTGG CAAAGTCGTG
GCAAACATTC GCGGAGTATG GCCTCAACTA TTTTGCAGCG TCGCAACTCA GCGCGGCCAC
TGTACTCGAG AGGCGTATCA CCGGTTCGTA ATGTCAGGAA TCGCTAGACG AAGGACGCAT
ACTGCAATCA CGGCAGGCGA CGTGGTATGG ACTGCGCATG ACCCATTTGG GCCCACGAAT
GGCACATTCG GCATGCTTCT GCGCTACATT TCAGAACGCT CCGTTGAGGC TTTGAGCACT
GCTCGCGTCA TTGCCGACGC AGCGGTATAT ATCCTCACTC ATGGAGCAAC CGCGCAAGCC
GTATTTCAGT TCATCGAAAC GGCATTCGCC CCCTTGTTTA CAAGGGACGA CGTAGACGCG
GATTCTCTGG AGAGACTGCT GGCGATTCGC CTAGTCGAGG CCATGCAGAC GCTGTTTAAT
TCCAACACCC CTAACATCTA CCTTCAGTCC GTACTAGATT CACAAAGCGA GCGGTGGCAA
GGCTTCATTG AGGAGACAGT CCGAAAGGCT CGCATGCTAG CGACCGAGAC CCCGGTAGAC
GCACTGTGCG ACAAATCGGT ACCGGTCATG GCGATGTACG TCACGAGGTA TCCGTGTTAC
ATCGCCACGC GGTCAGCACA CGATTCCATG ACATGA
|
|---|
| Protein sequence | MLTESTAIQP PNSAQGFEDF CHIVYGTIFN DPTATKNGRS GQKQYGVDVF VRAGERRVGI
QCKQKSFAKL TQKIIDEEVA AADKGLVEKR LAAISELIIA TTAANDAKLI AYAAKLTDER
KQEGKFSVNL AFWDTLQVLV KSNPSLQWQY APHMAGGAIF EFSRKQDEIS RKLDDHREVL
QVVAAATTAA ASNGRVSTNS IPDARLDSLD KLVDSQLDGV KKMLMEGRFT AALESLTSLG
QNLGAFDIYQ RSRWFSQRAH CYWQQESLEF AAKDFDSAYG LTPADDKTAS NHIRSALLRQ
QYDRALELAS EARLAFPASA NVFNVWAEAA ERCGKRPVWE HDVPPEFRDD ADVLHVFGWQ
ALLAGELSVA AEFSKKVADK GAPTFEQASL RLLTLVNMAT ANGVFAGAGI VSEQTLHELA
ETLQFFEPVD KHIWNRQGGL STAMTVACIG YAYLMTGKPE EAKKFLLKGV QCFPAEGQLA
RICLEAIVKA DGNITAGYKF GSEHVEVLDE QGQMMVAEMA AETGDIATLE RISTILRERN
TNDVECDEEL RAFEWLALLA SGNDEQLDAV LTFDAFSSMT SKVAKVIVAN IAFRRKATWA
IDAVQSLEKA LHDESPTREV IMVSRACIAV GLYSEAAKRL GKILPRGIVS EPHKLLFEAL
VKGGSRRKAL RMLEEFPPTA IDDADIRALA LELAEGANDW TELSRLSDLQ LKANPGHAEA
WTFRAAVLLR QRQPQAVQRL IREQIPLDLQ GSTKSRAQLA RFEIEFGNPE RGFKRLYQVF
RRSLADVDVA SIYLGNVLTM QPERRPSKPL GVGPATAVTL SVGNTTRQLI IDPADLTDLP
KAAHFISVSD PTYAVLEGKM LGDAIQLVDG LGIAHDYTVV DINSGYMALA AHAEKLVRES
VVPGGPITSI EMQTREDGQL DLSLMQSMLR ARTERIKLAL DGYAQGQATI GVVAKLLGVS
PLVMAADWPA EPGPKLYACS GVFEEQAASE ELLKSWEGPL VVDLTAINEL VVNGMESALS
LVKPVYISTS SVEVLDRLIE VAATDRAVGH MSETNGQITM VHYGEGYHEG RRAYLEKLRK
CVDEHCEIAP SWGAEELPEG LPRFAEVLDS ESYDTLLLCL EKQALLLTLD GRLRELGKVV
ANIRGVWPQL FCSVATQRGH CTREAYHRFV MSGIARRRTH TAITAGDVVW TAHDPFGPTN
GTFGMLLRYI SERSVEALST ARVIADAAVY ILTHGATAQA VFQFIETAFA PLFTRDDVDA
DSLERLLAIR LVEAMQTLFN SNTPNIYLQS VLDSQSERWQ GFIEETVRKA RMLATETPVD
ALCDKSVPVM AMYVTRYPCY IATRSAHDSM T
|
|---|
| |