| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_3297 |
|---|
| Symbol | |
|---|
| ID | 6181369 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010552 |
|---|
| Strand | + |
|---|
| Start bp | 208701 |
|---|
| End bp | 209690 |
|---|
| Gene Length | 990 bp |
|---|
| Protein Length | 329 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 641683069 |
|---|
| Product | fimbrial protein |
|---|
| Protein accession | YP_001809983 |
|---|
| Protein GI | 172062332 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3539] P pilus assembly protein, pilin FimA |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 0.0152009 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAATTCA TACCAATTTT GATTTTGGTT TTATTGTCAA ATTATTCTCA CGCGTCTTGC
ACGATTAAAA GAAGTGACGG TGTCATGGTG CCGTCACTTA TCGTTACTCT TCCGAAATTC
AGTCCGCCTC CATTCGATCC GAATATCGCG GATGGAACGG TGATTTATAC GTCGTCTGGG
GCGGCTAGCG GATTGGGTGG AGTGTTGAAT TGCACTTCGG CGATTGGTGA CGTGATCTAT
GTCGGAACGA CAGGTTCCGC TCCCGGAAAA TACAATGCGT ATCCGACTCC AGTTGCCGGA
GTGGGAGTTC GTATAAAAGG GGGTATCAAT GTGACTCAAT GGTGGCCTCA ATCAGGTAAT
GTCGCCGAAA CGTCGAGTAA TTACCTTGCA GGGTCGGAGA TTACGATTGA GCTCGTGAAA
ACCGGAAATA TTACGGCGCC GGGTATTCTG AGTGGTGAAG TCGGAATGAC TTTTGCATTA
AATCATGGAA CAAAAATCCG TTCAATCGTG ACCAATGGCG CGATAAACAT TCGTCCACAA
GTGCCGACCT GCAATCTGTT GACGCCGAAC ATCGCAGTCG ATCTGGAGAA AGTGTCCGTG
GGTGAGCTCA AAGGCATTGG CGCAACGTCA TTGCCCAAGC CCATGGAGGT GCGTCTCAAG
TGCTCTGGCG GGAACCCAGG CACGTCGACA AGAATGTTCA TGACGCTGAC GGACTCGGCC
AATTCCGGTA ATCGGTCCGA TACGCTCTCT CTCGCGTCCG GTTCGACCGC CAAAGGTGTC
GGCATTCAGA TACTGCGTGG TTCGGACAAC ACGCTGGTGA GTTACGGCCC GGACTCCGCT
CAGGCAGGAA ATCCCAATCA ATGGGCGGTT GGAAGCTTCG GCAATGTCGA CGTGACTATT
CCTTTCCGAG CCCGTTATGT GCGAACGTCC GCTACCGTGA TTCCCGGCAA GGCGAATGGT
GTTTCCACGT TCACCATGAG CTATCAGTGA
|
|---|
| Protein sequence | MKFIPILILV LLSNYSHASC TIKRSDGVMV PSLIVTLPKF SPPPFDPNIA DGTVIYTSSG
AASGLGGVLN CTSAIGDVIY VGTTGSAPGK YNAYPTPVAG VGVRIKGGIN VTQWWPQSGN
VAETSSNYLA GSEITIELVK TGNITAPGIL SGEVGMTFAL NHGTKIRSIV TNGAINIRPQ
VPTCNLLTPN IAVDLEKVSV GELKGIGATS LPKPMEVRLK CSGGNPGTST RMFMTLTDSA
NSGNRSDTLS LASGSTAKGV GIQILRGSDN TLVSYGPDSA QAGNPNQWAV GSFGNVDVTI
PFRARYVRTS ATVIPGKANG VSTFTMSYQ
|
|---|
| |