| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_3036 |
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| Symbol | |
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| ID | 6178726 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria MC40-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010551 |
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| Strand | + |
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| Start bp | 3369727 |
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| End bp | 3372714 |
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| Gene Length | 2988 bp |
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| Protein Length | 995 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 641682812 |
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| Product | outer membrane autotransporter |
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| Protein accession | YP_001809728 |
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| Protein GI | 172062076 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3468] Type V secretory pathway, adhesin AidA |
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| TIGRFAM ID | [TIGR01414] outer membrane autotransporter barrel domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 35 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGAATCGTC GTCGTTTTCC ATTTTCCCAA GCACGCAGCG GCCGGCGTCT CGCGCATTCC
GCGCTGATCG CCGGCGCCGT GATCCCGTGG CCGTCGGCTG CGCAAGTCGT CAGCGGCCCG
CAACAGGCCA ACGGCGTCGA GCTCGAAGTC GCGCCGGGCG ACTATTCGAC ATCCCAAACC
GGCCAGTCGG TCCTGTCCGC GATCAACGGC GGCCGCCTGA CGACCGCCGG CAAAACGCGC
GTGTTTTCGA CAGGCCACGT CGCGGCGGGT GTGGCCGCAT CGGGTGCCGG TTCGCGCGTG
GAACTGCGCG ATACCGAAAT CCGTACGCGC GGCCGCACCA GCGTCGGCAT CGACGTCCGC
CAGGGCGCCA GCGCGTCCGC GGCGCGCACG TCGATCGATA CCGATGGCGA CTTCGCGCAC
GGTGCCTACG TGTACGGCGC CAACGGCCGG CTCCGCATCT CGGACAGCGT GATCGTCACG
CGCGGCAAGG AAAGCTCGGG CATCGCGGTG AATGGCGCGC CGGGCGGCAC CGTCGACGTC
GCCGATACGT TGATCAGAAC CAGCGGCCTG TTCGCGACCG GCCTGTCCAT CAGTTACGAC
GGCGCGCGCG CCACGCTGGA CCGCACAGAT ATCCGGACGG ACGGCGACTA CGCGTCGGTG
CTGTACCTGC CGAGCGCGTC CACCGTCGCG TTCAACGACT CGTACCTGGA AACCGGCGGC
GAAGCCGCCG TCGGCATCGA TACCCGCGAG GGCGACGTCG CACTTGCACG CACGCGCGTC
GTCACGCACG GCACCAGCGC GCACGGGCTG TATGCGTCGA AGGAGTACGC CGGCACGCCT
GTCATCGACG CGATCGATAC GCACGTGACG ACCACTGGCG ACCGCTCGAT CGGCGCGATC
GCGCGACTCG GCGGCAAGAT CGCGATGACG CGCGGCAGCA TCGAAACCGA CGGCGACCGT
GCGCGCGGCG CGATGTCGAC CGGCACGGAC TCCGTCGTCG CCCTCACCGG CATGACCGTC
GACACACACG GCACCGGGGC CACCGCGCTT CATGCAAGCG CCGGCGGAAA GATCGACCTG
TTGCGCACCG ACGCGCGCGC AAGCGGCGAC GACGCCTATG CGGCGGGCGT GTACGACGGC
GCCCTGACCA TCGACGACGG TTCGCTCGTC AGCGAGCGCC ACGGCGCAAT CGACGCATCC
GGCGCGACAA TCATGCTCCG CAACGGCACG CACGCCAGCG GCGGCAACGG CACGTTGCTG
TCCGTCCACG CGCAAACCGG CGCGCCCGTG CGGCTGACGC TCGACACCGG CTCGCATGCC
GACGGCGACA TCGTGAATCA CCCCGCCGAC GACGGGCACC CGACGCATGC GATCACAGAC
GTCGTCCTGT CCAAGGCATC CTCCTGGACC GGCGCGACCG ACGCGGTACG CGCGCTGTCG
CTCGACACGA ACAGCCGCTG GACCGTCACC GCGAACTCGT CGGTCGGCTC CGTCGCGCTG
AACGACTCGA CGATCGCATT CGCCGATCCG GCTGCCGGCG CGCCGGCGAC GCCGCGCACG
CTCGTCGTCA CCGGCGACTA CGCCGCGCGC AACGGCAAAC TGGTCCTCCA CACGACGCTG
CAGGACGACG CATCCCCCAC TGACCGTCTG GTGATCGACG GCGGCCACGC GTCTGGCGAC
ACCGGCGTCG TCATCAAGCG CGCGGGCGGA GACGGCGCGC CAACGACCGT CGGCATCCCG
ATCGTCGAAA CCCGCAACGG CGGCACGACG GATGCGTCGG CGTTCGCGCT CGACGCGGCG
TCGGACGGCT ACCGGCAAGG CTTCGGCACG CTGTCGGCCG GCGGCTACGA CTACATGCTC
GCGCGCGGCG GCAACGGCGG CAAGGCCGAC GACTGGTACC TCGTCTCCGC CGCGAAGCCC
GAGCCACCCC AGCCACCACA ACCGCCCCAG CCGCCCCAGC CGCCCGCGCC CGGCGATTCC
GAGCCGCCCG TGTTCCCCGA AACCACACCC CCGACGCGCT CCGTCGCGCC GGAGCCCGAC
GCCTATCTGG CGAACGCCGA TGCCGCCGCG ATGATGGCCG TCCATTCGCT GCATCAGCGC
GAGGATCGCT CGCTTCGCAC CGGCGGCGCC GCATCGGGCC CGCTCGACGG TGCCGTGTGG
CTGCGTACCG AAGGCCAGTT CACGTCGATA TCGGGCGGGG GCCGCAGCGT GTCGGGCAAC
GGCCGGCTCG TGCATGCGGG TGCCGACCTG CTCCGCTTCG ACGACGGCCG CGGCGGCAGC
ATCCGGGCCG GCGTGATGGG TATGTACGGC AGCCAGACGA ACTGGTCGAC CCGCCCGCTG
TGGAATGCCG TCGAGCAGCG CACCGCCGAT GCCACCGCGC GCGGCAGCGT CGAAGGCTAC
AACGCCGGGC TATACGGGAC GTGGTACGGC AATCGCGACA TCCTGTCCGG CCCGTACGTC
GATGCGTGGT TCATGTACGG CGCATATGCG AACCGCGTCG GCGGCAGTCT CGCCGGGGAT
TCGTACCGGT CGCGCACCGT CACCGGGTCG CTCGAGGCCG GCCATTCGTT CCGCGTCTAC
GAGCGCGGCG ACACGCGCTT CTTCGTCGAA CCCGAGGTAC AGCTCGTCGT CTCCGACTAC
CGCGCGGCGG CTCACCGTGC CGCGGGCGGC TACGTCGACG GACAGGGCTC CACCGACGTG
CTGACCCGCG TCGGCGTACG TGTGCATGGC GTCACCGCGA TCGCGCCCGG GCGCGAACTG
CGACCGTTCG TCGAAGCGAA CTGGTGGCAC GGCCCCGGCT CGCGCTCGCT GACGCTCGAC
GGCAACGCGT TCTCGTTCAG CGTGCCGCGC GACCGCGCCG CGTTCAGAAT CGGCGCGACC
GGGCAGGTCT CGAAACGCTT CACGGTGTCG GCCAGCCTCG GCGTGGAAGC GAATTTGTCC
GACTACGCGG TGGTCAAGGG CGAGTTCACG GCGAAGTACC GCTGGTAG
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| Protein sequence | MNRRRFPFSQ ARSGRRLAHS ALIAGAVIPW PSAAQVVSGP QQANGVELEV APGDYSTSQT
GQSVLSAING GRLTTAGKTR VFSTGHVAAG VAASGAGSRV ELRDTEIRTR GRTSVGIDVR
QGASASAART SIDTDGDFAH GAYVYGANGR LRISDSVIVT RGKESSGIAV NGAPGGTVDV
ADTLIRTSGL FATGLSISYD GARATLDRTD IRTDGDYASV LYLPSASTVA FNDSYLETGG
EAAVGIDTRE GDVALARTRV VTHGTSAHGL YASKEYAGTP VIDAIDTHVT TTGDRSIGAI
ARLGGKIAMT RGSIETDGDR ARGAMSTGTD SVVALTGMTV DTHGTGATAL HASAGGKIDL
LRTDARASGD DAYAAGVYDG ALTIDDGSLV SERHGAIDAS GATIMLRNGT HASGGNGTLL
SVHAQTGAPV RLTLDTGSHA DGDIVNHPAD DGHPTHAITD VVLSKASSWT GATDAVRALS
LDTNSRWTVT ANSSVGSVAL NDSTIAFADP AAGAPATPRT LVVTGDYAAR NGKLVLHTTL
QDDASPTDRL VIDGGHASGD TGVVIKRAGG DGAPTTVGIP IVETRNGGTT DASAFALDAA
SDGYRQGFGT LSAGGYDYML ARGGNGGKAD DWYLVSAAKP EPPQPPQPPQ PPQPPAPGDS
EPPVFPETTP PTRSVAPEPD AYLANADAAA MMAVHSLHQR EDRSLRTGGA ASGPLDGAVW
LRTEGQFTSI SGGGRSVSGN GRLVHAGADL LRFDDGRGGS IRAGVMGMYG SQTNWSTRPL
WNAVEQRTAD ATARGSVEGY NAGLYGTWYG NRDILSGPYV DAWFMYGAYA NRVGGSLAGD
SYRSRTVTGS LEAGHSFRVY ERGDTRFFVE PEVQLVVSDY RAAAHRAAGG YVDGQGSTDV
LTRVGVRVHG VTAIAPGREL RPFVEANWWH GPGSRSLTLD GNAFSFSVPR DRAAFRIGAT
GQVSKRFTVS ASLGVEANLS DYAVVKGEFT AKYRW
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