| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_2945 |
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| Symbol | |
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| ID | 6178472 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria MC40-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010551 |
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| Strand | - |
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| Start bp | 3265374 |
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| End bp | 3267326 |
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| Gene Length | 1953 bp |
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| Protein Length | 650 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 641682721 |
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| Product | lytic transglycosylase catalytic |
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| Protein accession | YP_001809637 |
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| Protein GI | 172061985 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0741] Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.78067 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 0.502179 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCGAACA GCCTTTTCCG AGTATATCGC GCGGTCGCGC TCACGCTTTC CGCCGCCGCG
CTCGTCGCGG GCACGGCCGC GTGCGCCGCA CCGGGCGACG ACACGCTCGC CGGGGATGAC
CAGATCTTCG TGCAGCTTCG CGAAGCCGCA CGCCGCAACG ACGCCGCGAA GGCCGCGCAG
CTCGCGTCGC TGATCCCGAA CTATCCGGTC CCGTCCTACG TCGAGTATTT CCAGATCAAG
CCGCAGCTGT TCGATTCGAC GGGCCGCGCA CGTGTCGACG CGCCCGACGC ACCCGTGCAG
TCGTTCCTGC AGCGCTACGA CGGACAGGCG ATCGCCGATC GCATGCGCAA CGACTACCTG
CTCGTGCTCG GCGCGCGCCA CGACTGGCGC AACTTCGACG ACCAGTACAA GCGCTTCCTG
CTCGACGACG ACACGCAGGT CAAGTGCTAC GCGCTCGAAT CGCGCGCGGC GCGCGGCGAG
AACGTCGCCG ACGCGGCGCG CGCGCTGCTC GTCGAGCCGA AATACTACGG CGACGCCTGT
GTCGACCTGA TTACGGCGCT GACGGTCAAC CAGCAGTTCA CGAGCGACGA CGTGTGGCAG
CAGGCGCGCC TCGCGTACGA GCAGAACTAC ACGACGCTCG GCGGCAAGAT CGTCGACGCG
CTCGGCGCGC GCCCGGTCGG CTTCGACCAG GCGACCAGCG CGCCGCCGCT GTATCTCGCG
CGCGGCGTCG GCCCCGACGC GGCATCGCAC CAGCTCGCGC TGATCGCGCT TAGCCGCATG
GCGCGCAACG ATCCGGACGC GGCGGCCGGG ATGCTGACGT CCGTCGCCGG CTCGCTCACT
AAGCCGGAGC AGGCGATCGC GTGGGGCGCG ATCGGCTACC AGGGCGCGAT CAAGCGCTCG
CCGCTCGCGT CGGTCTGGTA TGCGAAATCC GCGAACGCGT CGCTGTCGAA TCCCGGCTAC
GAATGGCGCA CGCGCGCCGC GCTGCTCGCC GGCAACTGGC CGATGGTGCG CTGGTCGATC
GAGCAGATGC CGCCGTCGCT GCGCGAGGAT CCGGCCTGGA TCTACTGGCA TGCGCGCGCG
CTCAAGCAGA GCGGCGACAC GCTGCAGGCG AACCAGGAGT TCGAGCAGGT CGCGGGCCAG
TACAACTTCT ACGGGCAGCT CGCCGGCGAA GAGCTCGGCC AGCGCACGAG CGTCCCGCCG
CGCACGAAGG TGAGCGATGC CGAGATCGGC GCGATGAGCA AGATCCCGGG CTTCGCGCTA
GCGCAGCGCT TCTATGCGCT GAACCTGCGC CTCGAAGGCA ACCGCGAATG GAACTGGCCG
CTGCGCGGGA TGACCGATCG CCAGCTGCTC GCGGCCGCCG AATACGGCAA GCGCGTCGAC
CTGCTCGACC GCACGGTCAA CACGGCCGAC CGCACGAAGG CCGAGCACGA CTTCACGCTG
CGCTACCCGT CGCCGTACCG CGACATCGTC GAGCGCTACG CGCAGTCGAC CGGCCTCGAC
ATCGAATGGG CGTACGGGCT GATCCGCCAG GAATCGCGCT TCATCACGAA CGCGCGTTCT
TCCGTCGGCG CGGGCGGGCT GATGCAGCTG ATGCCGGCCA CCGCGCAGCT CGTCGCGAAG
AAGCTCGGGA TGGGCACGAT CTCACGTGCG CAGATGCACG ACATCAATAC CAACATCCAG
CTCGGCACCT GGTATCTGGC GGACATCTAC AACAACTTCG ACAGCTCGCC GGTGCTGGCG
ACGGCCGGCT ACAACGCGGG CCCCGGCCGG CCGCGCCAGT GGCGCCAGGT GCTGACGCAG
CCGGTCGAAG GCGCGATCTT CGCGGAGACG ATTCCGTTCA ACGAGACGCG CGACTACGTG
AAGAACGTGC TGTCGAACAC CGTCTACTAC GCGGCGCTCT TCGAGGGCAA ACCGCAGTCG
TTGAAGAAAC GCCTGGGCAT GATCTCGCCC TGA
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| Protein sequence | MSNSLFRVYR AVALTLSAAA LVAGTAACAA PGDDTLAGDD QIFVQLREAA RRNDAAKAAQ
LASLIPNYPV PSYVEYFQIK PQLFDSTGRA RVDAPDAPVQ SFLQRYDGQA IADRMRNDYL
LVLGARHDWR NFDDQYKRFL LDDDTQVKCY ALESRAARGE NVADAARALL VEPKYYGDAC
VDLITALTVN QQFTSDDVWQ QARLAYEQNY TTLGGKIVDA LGARPVGFDQ ATSAPPLYLA
RGVGPDAASH QLALIALSRM ARNDPDAAAG MLTSVAGSLT KPEQAIAWGA IGYQGAIKRS
PLASVWYAKS ANASLSNPGY EWRTRAALLA GNWPMVRWSI EQMPPSLRED PAWIYWHARA
LKQSGDTLQA NQEFEQVAGQ YNFYGQLAGE ELGQRTSVPP RTKVSDAEIG AMSKIPGFAL
AQRFYALNLR LEGNREWNWP LRGMTDRQLL AAAEYGKRVD LLDRTVNTAD RTKAEHDFTL
RYPSPYRDIV ERYAQSTGLD IEWAYGLIRQ ESRFITNARS SVGAGGLMQL MPATAQLVAK
KLGMGTISRA QMHDINTNIQ LGTWYLADIY NNFDSSPVLA TAGYNAGPGR PRQWRQVLTQ
PVEGAIFAET IPFNETRDYV KNVLSNTVYY AALFEGKPQS LKKRLGMISP
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