| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_2711 |
|---|
| Symbol | |
|---|
| ID | 6178912 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010551 |
|---|
| Strand | + |
|---|
| Start bp | 3009568 |
|---|
| End bp | 3010107 |
|---|
| Gene Length | 540 bp |
|---|
| Protein Length | 179 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 641682487 |
|---|
| Product | putative PTS IIA-like nitrogen-regulatory protein PtsN |
|---|
| Protein accession | YP_001809404 |
|---|
| Protein GI | 172061752 |
|---|
| COG category | [G] Carbohydrate transport and metabolism
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG1762] Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) |
|---|
| TIGRFAM ID | [TIGR01419] PTS IIA-like nitrogen-regulatory protein PtsN |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 32 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 0.118815 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCAAACG CCTTGATATC GCCGAACATG GAAAATCAGT CTGCCGCCGC AAGGAGACCC
CAGGCCGCCC TATCGCCTGC CAACATGAAT CGCCTAGCCA AAATCCTGCC CATAGAGAAC
GTCGTCATCG ACCTCTCCGT CACCAGCAAG AAACGCGTCT TCGAACAAGC CGGGCTGATG
TTCGAGAATC AGAACGGCGT CGCCCGCAGC ACCGTCACGG ACAACCTGTT CGCGCGCGAG
CGCCTCGGCT CGACCGGGCT CGGCGAAGGC GTCGCGATTC CGCACGGGCG CATCAAGGGG
CTCAAGCACC CGCTCGCCGC ATTCGTGCGG CTCGCCGACG CGATCCCGTT CGAAGCGCCC
GACGGCCAGC CGGTCGGTCT CCTGATTTTC CTGCTCGTCC CCGAGCAAGC TACCCAACAG
CACCTCGAGA TCCTGTCGGA AATCGCGCAA CTGCTATCCG ATCGCGACGC GCGCGAGCGT
CTGCACAACG AAACAGATCT CGCCGAGTTG CATCGCGTGC TCACTCAGTG GCAACCTTGA
|
|---|
| Protein sequence | MPNALISPNM ENQSAAARRP QAALSPANMN RLAKILPIEN VVIDLSVTSK KRVFEQAGLM
FENQNGVARS TVTDNLFARE RLGSTGLGEG VAIPHGRIKG LKHPLAAFVR LADAIPFEAP
DGQPVGLLIF LLVPEQATQQ HLEILSEIAQ LLSDRDARER LHNETDLAEL HRVLTQWQP
|
|---|
| |