| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_2209 |
|---|
| Symbol | upp |
|---|
| ID | 6177825 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010551 |
|---|
| Strand | + |
|---|
| Start bp | 2462819 |
|---|
| End bp | 2463469 |
|---|
| Gene Length | 651 bp |
|---|
| Protein Length | 216 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 641681982 |
|---|
| Product | uracil phosphoribosyltransferase |
|---|
| Protein accession | YP_001808904 |
|---|
| Protein GI | 172061252 |
|---|
| COG category | [F] Nucleotide transport and metabolism |
|---|
| COG ID | [COG0035] Uracil phosphoribosyltransferase |
|---|
| TIGRFAM ID | [TIGR01091] uracil phosphoribosyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 0.683076 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAACAGG ACAGCCGTTT CCCGAATCTC TTCATCACCG ATCACCCGCT GATCCAGCAC
AAGCTCACGC ACATGCGCGA CAAGGACACG TCGACGCGCA CGTTCCGCGA GCTGCTGCGC
GAAATCACGC TGCTGATGGG CTACGAGATC ACCCGCAACC TGCCGATCAC GACCAAGCGG
GTCGAAACCC CGCTCGTCGC GGTCGACGCA CCGGTGATCG CGGGCAAGAA GCTGGCGATC
GTGCCCGTGC TGCGCGCGGG CATCGGGATG TCGGACGGCC TGCTCGACCT GGTCCCGTCC
GCGCGGGTCG GCCACATCGG CGTGTACCGC GCGGAAGATC ACCGCCCGGT CGAATACCTG
GTGCGCCTGC CGGATCTCGA AGACCGCATC TTCATCCTGT GCGACCCGAT GGTCGCGACC
GGCTACTCGG CCGTGCACGC GGTCGACGTG CTCAAGCGCC GCAACGTGCC GGCCGCGAAC
ATCATGTTCG TCGCGCTGGT CGCCGCGCCC GAAGGCGTGC AGGTGTTCCA GGACGCGCAC
CCGGACGTGA AACTGTTCGT CGCGTCGCTC GACTCGCACC TGAACGAGCA CGCGTACATC
GTGCCGGGCC TGGGCGACGC GGGCGACCGC CTGTTCGGCA CCAAGAACTG A
|
|---|
| Protein sequence | MKQDSRFPNL FITDHPLIQH KLTHMRDKDT STRTFRELLR EITLLMGYEI TRNLPITTKR
VETPLVAVDA PVIAGKKLAI VPVLRAGIGM SDGLLDLVPS ARVGHIGVYR AEDHRPVEYL
VRLPDLEDRI FILCDPMVAT GYSAVHAVDV LKRRNVPAAN IMFVALVAAP EGVQVFQDAH
PDVKLFVASL DSHLNEHAYI VPGLGDAGDR LFGTKN
|
|---|
| |