| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_1709 |
|---|
| Symbol | |
|---|
| ID | 6177414 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010551 |
|---|
| Strand | + |
|---|
| Start bp | 1908896 |
|---|
| End bp | 1911337 |
|---|
| Gene Length | 2442 bp |
|---|
| Protein Length | 813 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 641681468 |
|---|
| Product | RNA-binding S1 domain-containing protein |
|---|
| Protein accession | YP_001808410 |
|---|
| Protein GI | 172060758 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG2183] Transcriptional accessory protein |
|---|
| TIGRFAM ID | [TIGR00426] competence protein ComEA helix-hairpin-helix repeat region |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCAAAAT GCCCCGCTTC ACTCACCCGC GGCATCTGGT CCGGCGGGCC CGTCTCGCAG
CCCGCCGCGC GGTCTGCCGG CCCGCGCCGC GATTTCAGCA GGCACATCAT CCACGACATG
ACGGAAACCG TAGCACTCAA GATCGTACAG CGCATCGCCA CCGAACTGTC CGTCCAGCCG
CGCCAGGTCG CGGCGGCCGT GCAACTCCTC GACGAAGGCT CGACCGTTCC GTTCATTGCC
CGGTACCGCA AGGAAGTGAC GGGCAACCTG GACGACACGC AGCTGCGCCA GCTCGAGGAG
CGCCTCCTGT ATCTGCGCGA ACTGGAGGAT CGCCGCGCGA CGATCCTGTC GAGCATCGAC
GAACAGGGCA AGCTGACCGA CGAACTGCGC GCCGCGATCG ACGCGGCCGA CAGCAAGCAG
GTGCTCGAAG ACCTTTATCT GCCGTACAAG CCGAAGCGCC GCACGCGCGC GCAGATCGCC
CGCGAAGCCG GCCTCGAGCC GCTCGCGCAG GCGCTGCTCG CGAATCCGCT GCTCGACCCG
CAGGCGGAAG CCGCCGCGTA CGTCGACGCC GACAAGGGTG TCGCCGACGT GAAGGCCGCG
CTCGACGGCG CGCGCGACAT CCTGTCCGAA CAGTTCGGCG AAACGGCCGA ACTGCTCGGC
AAGCTGCGCG ACTATCTGCA CAGCCAGGGC GTCGTGTCGT CGGCCGTGGT CGAGGGCAAG
GAAAACGAGG AAGGCGAGAA GTTCCGCGAC TACTACGACT ACGCGGAGAC GATCCGGACC
GTGCCGTCGC ACCGCGCGCT CGCGCTGTTC CGCGGCCGCA ACGCCGGCGT GCTGACCGTC
AAGCTCGGCC TCGGCGAGGA ACTCGACGCG CAGGTTCCGC ATCCCGGCGA AGCGATGATC
GCGCGCCATT TCGGGATCGC GAACCAGAAC CGTCCCGCCG ACAAGTGGCT GTCGGACGTG
TGCCGCTGGT GCTGGCGCGT GAAGGTGCAG CCGCACATCG AGAACGAACT GCTCACGCAA
CTGCGTGAAA CGGCGGAAGC CGAGGCGATC CGCGTGTTCG CGCGCAACCT GAAGGATCTG
CTGCTGGCCG CGCCGGCCGG CCCGAAGGCC GTGATCGGTC TCGACCCCGG CTTGCGCACG
GGCGTGAAGG TCGCCGTGGT CGACCGCACC GGCAAGCTGC TCGCGACCGA CACGATCTAC
CCGCACGAGC CGCGCCGCGA CTGGGACGGC TCGCTCGCGA AGCTCGCGCG CATCGCCGCG
CAGACGCAGG CCGAGCTGAT CAGCATCGGC AACGGCACCG CGTCCCGTGA AACCGACAAG
CTCGCGAGCG AGCTGATCTC GAAGCACCCA GAACTGCGGC TGCAGAAGAT CGTCGTGTCG
GAAGCCGGCG CGTCCGTCTA CTCGGCGTCG GAGCTGGCCG CGAAGGAATT CCCGGAACTC
GACGTGTCGC TGCGCGGCGC CGTGTCGATC GCGCGCCGTC TGCAGGATCC GCTCGCCGAA
CTCGTGAAGA TCGAGCCGAA GGCGATCGGC GTCGGCCAGT ACCAGCACGA CGTGAACCAG
CGCGAACTCG CCCGCTCGCT CGACGCGGTC GTCGAGGATT GCGTGAACGC GGTCGGCGTC
GACGCGAATA CCGCGTCGGT CGCGCTGCTC GCACGCGTAT CTGGCCTGAA CGCGACGCTC
GCGCGCAACA TCGTCGACTA TCGCGACGCG AACGGGCCGT TCCCGTCGCG CGACCATCTG
CGCAAGGTGC CGCGTCTCGG CGACAAGACC TTCGAACAGG CGGCGGGCTT CCTGCGCATC
AACGGCGGCG AGAATCCGCT CGACCGCTCG TCGGTCCACC CGGAGGCCTA TCCGGTCGTC
GAACGGATCC TCGCGAAGAT CAACAAGCGC ATCGACGACG TCCTCGGCAG CCGCGACGCG
CTGTCCGGAC TGTCGCCGAC GGAATTTGTT GACGAACGTT TCGGCCTGCC GACCGTGCGC
GACATCCTGT CCGAGCTCGA AAAACCGGGT CGCGACCCGC GGCCCGAATT CAAGACCGCA
ACGTTCCGCG ACGGCGTCGA GAAGGTGTCC GACCTGATGC CCGGCATGCT CCTCGAAGGG
GTCGTGACGA ACGTCGCGGC GTTCGGCGCG TTCGTGGATA TCGGCGTGCA CCAGGACGGC
CTCGTCCACG TGTCCGCGAT GTCGACGAAG TTCATCAAGG ATCCGCACGA AGTCGTGAAG
GCCGGCCAGG TCGTCAAGGT CAAGGTGCTC GACGTCGACG TGAAGCGCCA GCGCATTGCG
CTGACCATGC GCCTCGACGA CGAAGCGGCC GCGCCCGGCA TGGCGCCGCG CGGCAGCCAG
GATCGCGGCA ATGCCGGCCG CGGCGCGGCC CGCCCGCAGC GTTCGCGCGA GCCGGAACCG
GCCGGTGCGA TGGCCGCGGC GTTCGCGAAG CTGAAGCGCT GA
|
|---|
| Protein sequence | MAKCPASLTR GIWSGGPVSQ PAARSAGPRR DFSRHIIHDM TETVALKIVQ RIATELSVQP
RQVAAAVQLL DEGSTVPFIA RYRKEVTGNL DDTQLRQLEE RLLYLRELED RRATILSSID
EQGKLTDELR AAIDAADSKQ VLEDLYLPYK PKRRTRAQIA REAGLEPLAQ ALLANPLLDP
QAEAAAYVDA DKGVADVKAA LDGARDILSE QFGETAELLG KLRDYLHSQG VVSSAVVEGK
ENEEGEKFRD YYDYAETIRT VPSHRALALF RGRNAGVLTV KLGLGEELDA QVPHPGEAMI
ARHFGIANQN RPADKWLSDV CRWCWRVKVQ PHIENELLTQ LRETAEAEAI RVFARNLKDL
LLAAPAGPKA VIGLDPGLRT GVKVAVVDRT GKLLATDTIY PHEPRRDWDG SLAKLARIAA
QTQAELISIG NGTASRETDK LASELISKHP ELRLQKIVVS EAGASVYSAS ELAAKEFPEL
DVSLRGAVSI ARRLQDPLAE LVKIEPKAIG VGQYQHDVNQ RELARSLDAV VEDCVNAVGV
DANTASVALL ARVSGLNATL ARNIVDYRDA NGPFPSRDHL RKVPRLGDKT FEQAAGFLRI
NGGENPLDRS SVHPEAYPVV ERILAKINKR IDDVLGSRDA LSGLSPTEFV DERFGLPTVR
DILSELEKPG RDPRPEFKTA TFRDGVEKVS DLMPGMLLEG VVTNVAAFGA FVDIGVHQDG
LVHVSAMSTK FIKDPHEVVK AGQVVKVKVL DVDVKRQRIA LTMRLDDEAA APGMAPRGSQ
DRGNAGRGAA RPQRSREPEP AGAMAAAFAK LKR
|
|---|
| |