| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_1393 |
|---|
| Symbol | |
|---|
| ID | 6176710 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010551 |
|---|
| Strand | - |
|---|
| Start bp | 1545661 |
|---|
| End bp | 1546671 |
|---|
| Gene Length | 1011 bp |
|---|
| Protein Length | 336 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 641681148 |
|---|
| Product | polysaccharide deacetylase |
|---|
| Protein accession | YP_001808097 |
|---|
| Protein GI | 172060445 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0726] Predicted xylanase/chitin deacetylase |
|---|
| TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCTACA ACGACTCCCA TTCGGCGACG CCTCCGGCGC GCCGCACGTT TCTGGCACAG
GCCGGCGCCG GGCTCGCGGC CGGCGTCGCG ATGGTCGCGG GCGTCTCGCA GCCGGCCGCC
GCCGCGCCGG CATCGCAGCC GGAAGACACG CGCGCCGGCG GATTCTGGCC GAACGATGCG
CGGCTCGTCA TCTCGATCTC GATGCAATTC GAGGCCGGCG GACAACCGCC CAAGGGTGCG
GACAGCCCGT TCCCGCCCGT CGAATTTCCA TCGTCGGTGC CGGTCGATCT GGCGTCGGCC
ACGTGGTTCG CGTATGGCTA TCGTGAAGGG ATTCCGCGCC TGCTTGACCT GTGGGATCGG
CACGGCGTGA AAGTCACGTC GCACATGATC GGGGAGGCCG CACGCCGGCA CCCCGAACTG
GCGCGCGAGA TCGTGTCGCG CGGCCACGAA GCGGCCGCGC ACGGCCCGAC ATGGCGCTCG
CAATTCGCGA TGACCCGCGA CGACGAGCGT CGCTTCCTCA CCGAGGCCCG CGACATGGTC
GAAGCGGTGA CGGGACAGCG CCCGGTCGGC TACAACTGCA ACTGGCTGCG GCGCGGGCCG
CACACGCTGC CGCTGCTGCA GGAACTCGGT TACGTGTATC ACATCGACGA CGTCAGCCGG
GACGAGCCGT TCATCGAGAC CGTCGGCGGT CGCGATTTCG TGGTCGTCCC GTACACCCTG
CGCAACAACG ACATCCTGCT GATCGAGGGC CGCAACTACT CGCCGACGAT GTTTCTCGAG
CAGATCAAGC TCGATTTCGA CCAGCTGTAC GCTGAAGCCG GGCAGCGGCG CAGATTGATG
TCGATCAGCG CGCACGACCG GATCAGCGGC ACGCCGCAGA TGGTCCGCGC CTGGGATGCT
TTCCTGCGCT ACGCCCGATC GCATCCTGGG GTGGCCTTCA TGCGCAAGGA CGACATCGCC
CGCTTCGCGC TGCGCAGTCC GTCGACGCTG CGCGAAGCCG AAACGATCTG A
|
|---|
| Protein sequence | MTYNDSHSAT PPARRTFLAQ AGAGLAAGVA MVAGVSQPAA AAPASQPEDT RAGGFWPNDA
RLVISISMQF EAGGQPPKGA DSPFPPVEFP SSVPVDLASA TWFAYGYREG IPRLLDLWDR
HGVKVTSHMI GEAARRHPEL AREIVSRGHE AAAHGPTWRS QFAMTRDDER RFLTEARDMV
EAVTGQRPVG YNCNWLRRGP HTLPLLQELG YVYHIDDVSR DEPFIETVGG RDFVVVPYTL
RNNDILLIEG RNYSPTMFLE QIKLDFDQLY AEAGQRRRLM SISAHDRISG TPQMVRAWDA
FLRYARSHPG VAFMRKDDIA RFALRSPSTL REAETI
|
|---|
| |