Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | BamMC406_1121 |
Symbol | |
ID | 6176229 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia ambifaria MC40-6 |
Kingdom | Bacteria |
Replicon accession | NC_010551 |
Strand | + |
Start bp | 1238139 |
End bp | 1239023 |
Gene Length | 885 bp |
Protein Length | 294 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 641680877 |
Product | polysaccharide deacetylase |
Protein accession | YP_001807828 |
Protein GI | 172060176 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG0726] Predicted xylanase/chitin deacetylase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 34 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 26 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATCTCGG GTAAAGCAAT GTCGAGAGAG ATCCTTTCGC GATGTGTGAT GATGTTCGGC ATCGACCATA TGGTTCGCGT GTTGCTATGG CGCGATCGAG TGGCGATCCT GCTCTACCAC GACCCCGATC CGGCGACGCT GGATCGACAC CTCACCTACC TGAAAACCAT CTGCGATCTC GTGCCGCTCG ACGCACGCGG TTTGCCGGGG AACGGGCGTC CGCGCGCGGC CATCACGTTC GACGACGGAC TGGCCGGGAA TGCCCGCCTG CTGCCGATCT TCATCAAGCA CAAGGTGCGG CCGACGATTT TCCTGTGCAG CCGTATTGTC TGCCGAGCGC GCAGACACTG GTGGTTGCAT CCAGCCGCGG AGCGGCTTGG CGTCGAGCGC CTGAAGCGAC TCGCGAACGA TCAACGCCTC GCCGAGCTAC GTGTGCACGG CTTTGACCAG GATGGCGACG ACGAGCCGAC GGGGCTGAAC CTGGAGCAGC TCGAAGCGAT GCGTCCATTC GTGGATTTTC AGGCGCATAC GCGCTTTCAC CCGATACTGA CGCGCTGCGG CGATAGCGAA TGCAAAGAGG AAATCATCGA ATCCCGGCGT GAAGTCGAGG CGTTGACCGG CACCCGTTGC GAACACTTCG CCTATCCGAA CGGCAATTAC GGCAAGCGGG AAATCAATCT GCTGAAGGCG GCGGGGTACA AGAGTGCGCG AACCTGTGAC GTCGGCTGGA ACGATCACCG TAGCGACGCG TTTCGTCTGA AAACCATCAT CATCGACGAT CGCGCATCGC TCAGGTGGTT CATCTGCAAT TTGACGGGCA TCCCGCCGTT TCTGGGTTAT CTGCGCAAGG GCGGCGGTTT GCGCGGGCAT TTTCCCCAGT TCTGA
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Protein sequence | MISGKAMSRE ILSRCVMMFG IDHMVRVLLW RDRVAILLYH DPDPATLDRH LTYLKTICDL VPLDARGLPG NGRPRAAITF DDGLAGNARL LPIFIKHKVR PTIFLCSRIV CRARRHWWLH PAAERLGVER LKRLANDQRL AELRVHGFDQ DGDDEPTGLN LEQLEAMRPF VDFQAHTRFH PILTRCGDSE CKEEIIESRR EVEALTGTRC EHFAYPNGNY GKREINLLKA AGYKSARTCD VGWNDHRSDA FRLKTIIIDD RASLRWFICN LTGIPPFLGY LRKGGGLRGH FPQF
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