| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_0907 |
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| Symbol | |
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| ID | 6176044 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria MC40-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010551 |
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| Strand | - |
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| Start bp | 997647 |
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| End bp | 1000598 |
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| Gene Length | 2952 bp |
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| Protein Length | 983 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 641680657 |
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| Product | formate dehydrogenase, alpha subunit |
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| Protein accession | YP_001807614 |
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| Protein GI | 172059962 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG3383] Uncharacterized anaerobic dehydrogenase |
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| TIGRFAM ID | [TIGR01591] formate dehydrogenase, alpha subunit, archaeal-type |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.979482 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.00925571 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGTCCCTCG ACACGAACAA CGTCCGCCAA GGCGGCTGCG GCTCAGGCCA ATGCGCGTGC
AAGAGCGCCG CCCAGGCGCG CGCCTTCGAT CCGTTCGACG ACACCGACTA CGGCACGCCG
CAACGGCATG CCGACACCGA CGTCACGCTC GAAATCGACG GCCAGCCGGT GACGGTGCCG
GCCGGCACGT CGGTGATGCG CGCCGCGATC GAAGCCGGCG TCAACGTGCC CAAGCTCTGC
GCGACCGATT CGCTCGAACC GTTCGGCTCG TGCCGTCTGT GCCTCGTCGA AATCGAAGGC
CGGCGCGGCT ATCCGGCATC GTGCACGACG CCCGCCGAAG CCGGGATGAA GGTGCGCACG
CAGTCGGACC GGCTGCAGTC GCTGCGCCGC AACGTGATGG AGCTGTACAT CTCCGACCAC
CCGCTCGACT GCCTCACCTG CCCCGCCAAC GGCGACTGCG AGCTGCAGGA CATGGCGGGC
GTCGTCGGCT TGCGCGAAGT GCGCTACGGC TTCGACGGCG CGAATCATCT GCGCGAGCAG
AAGGACGAAT CGAATCCGTA CTTCGCGTAC GATCCGTCGA AGTGCATCGT CTGCAACCGC
TGCGTGCGCG CGTGCGAGGA AACCCAAGGC ACGTTCGCGC TGACGATCGC CGCGCGCGGC
TTCGAATCGC GCGTCGCCGC CGGCGAAAGT GAATCGTTCA TGGCGTCGGA ATGCGTATCG
TGCGGCGCGT GCGTTGCCGC CTGCCCGACC GCCACGCTGC AGGAAAAATC CGTCGTCCGG
CTCGGGCAGG CCGAGCACTC GGTCGTCACG ACCTGCGCGT ACTGCGGCGT CGGCTGCTCG
TTCAAGGCCG AGATGAAGGG CACGCAGGTC GTGCGCATGA CGCCGCACAA GAACGGTCTC
GCGAACGAAG GCCACGCGTG CGTGAAGGGG CGCTTCGCGT GGGGCTACGC GACCCACAAG
GACCGCATCA CGAAGCCGAT GATCCGCGAG AAGATCACCG ACCCGTGGCG CGAAGTCAGC
TGGGACGAGG CGCTCACCTA CGCGGCGACG CAATTCCGCA AGCTGCAGCA GAAGTACGGC
CGCGATTCGA TCGGCGGCAT CACGTCGTCG CGCTGCACGA ACGAGGAAAC CTACCTCGTG
CAGAAGCTCG TGCGCGCCGC ATTCGGCAAC AACAACGTCG ACACCTGTGC GCGCGTGTGC
CATTCGCCGA CCGGCTATGG CCTGAAGGCG ACGCTCGGCG AATCGGCCGG CACGCAGACC
TTCGCATCGG TCGACCACGC CGATGTGATC GTCGTGATGG GTGCGAACCC GACCGACGGC
CACCCGGTGT TCGGCTCGCG CCTGAAGCGG CGCATCCGCG AAGGCGCGAA GCTGATCGTG
ATCGATCCGC GCCGCATCGA CGTGGTCGAC GGCCCGCACG TGAAGGCCGC GCACCACCTG
CAGCTGCGCC CCGGCACCAA CGTCGCGATC GTCAATGCGC TCGCGCACGT GATCGTCACC
GAAGGGCTCG TCGCCGACGC GTTCGTCGCC GAGCGCTGCG AAGCGCGCGC ATTCGAGCAA
TGGCGCGACT TCGTGTCGCG TGCCGAGAAC TCGCCCGAAG CGACCGCCGA TGCGACGGGC
GTGCCGGCCG AAGTGGTGCG CGAAGCCGCG CGGCTCTATG CGACCGGCGG CAACGCCGCG
ATCTACTACG GCCTCGGCGT GACCGAACAC GCGCAAGGCT CGACGACGGT GATGGGCATC
GCGAACCTCG CGATGGCGAC CGGCAACATC GGCCGCGAAG GCGTCGGCGT CAATCCGCTG
CGCGGCCAGA ACAACGTGCA GGGCTCGTGC GACATGGGCT CGTTCCCGCA TGAACTGCCA
GGCTACCGCC ACATCGGCGA CGACAGCGTG CGCGCGCTGT TCGAACAGGC ATGGTCGGCC
ACGCTGCAAC CGGAACCGGG GCTGCGCATC CCGAACATGT TCGACGCGGC GCTCGACGGC
AGCTTCAAGG GGCTCTACTG CCAGGGCGAG GACATCGTCC AGTCGGACCC GAACACGCAG
CACGTCGCCG CCGCGCTGTC GTCGATGGAA TGCGTCGTCG TGCAGGACAT CTTCCTCAAC
GAAACCGCGA AATACGCGCA CGTGCTGCTG CCGGGCTCGA CGTTCCTCGA GAAGGATGGC
ACGTTCACGA ACGCGGAACG CCGCATCTCG CGCGTGCGCA AGGTGATGCC GCCGCTCGCG
GGCTACGCGG ACTGGGAAGT GACGCTGCTG CTGTCGCAGG CGCTCGGCTA TGACATGCAT
TACACGCATC CGTCGGAAAT CATGGACGAG ATCGCACGGC TCACGCCGAC CTTCTCGGGC
GTGTCGTACG CGAAGCTCGA CGCGCTCGGC AGTATCCAGT GGCCGTGCAA CGAACAGGCA
CCGGACGGCA CGCCGACGAT GCACATCGAC GCGTTCGTGC GCGGCAAGGG CCGCTTTGTG
ATCACGCAGT ACATTCCGAC GCCGGAAAAG GTCACGCAGC GCTATCCGCT GATCCTGACC
ACGGGCCGCA TCCTGTCGCA ATACAACGTC GGTGCGCAGA CGCGCCGGAC CGAGAACGTC
CAGTGGCACG AAGAGGACCG CCTCGAGATC CACCCGCACG ACGCGGAGGA TCGCGGGATC
CGGACCGGCG ACTGGGTCGG CATCGAATCG CGGGCGGGCC AGACGGTGTT GCGCGCGCTC
GTGTCCGATC GCATGCAGCC GGGCGTCGTG TACACGACGT TCCACTTTCC CGAATCGGGC
GCGAACGTGA TCACGACGGA CAGCTCCGAC TGGGCGACGA ACTGCCCGGA ATACAAGGTC
ACGGCCGTGC AGGTGATGCC GGTCGCGCAG CCGTCCGACT GGCAGCGTGC ATACGCGCGC
TTCAACTCGG AGCAGCTCGA CCTGCTCGAG CGTCGCGCAG CCGCGCCGGC CACCGTGACG
ACGGGCAAGT GA
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| Protein sequence | MSLDTNNVRQ GGCGSGQCAC KSAAQARAFD PFDDTDYGTP QRHADTDVTL EIDGQPVTVP
AGTSVMRAAI EAGVNVPKLC ATDSLEPFGS CRLCLVEIEG RRGYPASCTT PAEAGMKVRT
QSDRLQSLRR NVMELYISDH PLDCLTCPAN GDCELQDMAG VVGLREVRYG FDGANHLREQ
KDESNPYFAY DPSKCIVCNR CVRACEETQG TFALTIAARG FESRVAAGES ESFMASECVS
CGACVAACPT ATLQEKSVVR LGQAEHSVVT TCAYCGVGCS FKAEMKGTQV VRMTPHKNGL
ANEGHACVKG RFAWGYATHK DRITKPMIRE KITDPWREVS WDEALTYAAT QFRKLQQKYG
RDSIGGITSS RCTNEETYLV QKLVRAAFGN NNVDTCARVC HSPTGYGLKA TLGESAGTQT
FASVDHADVI VVMGANPTDG HPVFGSRLKR RIREGAKLIV IDPRRIDVVD GPHVKAAHHL
QLRPGTNVAI VNALAHVIVT EGLVADAFVA ERCEARAFEQ WRDFVSRAEN SPEATADATG
VPAEVVREAA RLYATGGNAA IYYGLGVTEH AQGSTTVMGI ANLAMATGNI GREGVGVNPL
RGQNNVQGSC DMGSFPHELP GYRHIGDDSV RALFEQAWSA TLQPEPGLRI PNMFDAALDG
SFKGLYCQGE DIVQSDPNTQ HVAAALSSME CVVVQDIFLN ETAKYAHVLL PGSTFLEKDG
TFTNAERRIS RVRKVMPPLA GYADWEVTLL LSQALGYDMH YTHPSEIMDE IARLTPTFSG
VSYAKLDALG SIQWPCNEQA PDGTPTMHID AFVRGKGRFV ITQYIPTPEK VTQRYPLILT
TGRILSQYNV GAQTRRTENV QWHEEDRLEI HPHDAEDRGI RTGDWVGIES RAGQTVLRAL
VSDRMQPGVV YTTFHFPESG ANVITTDSSD WATNCPEYKV TAVQVMPVAQ PSDWQRAYAR
FNSEQLDLLE RRAAAPATVT TGK
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