| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_0594 |
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| Symbol | |
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| ID | 6178294 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria MC40-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010551 |
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| Strand | - |
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| Start bp | 667254 |
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| End bp | 672566 |
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| Gene Length | 5313 bp |
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| Protein Length | 1770 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 641680342 |
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| Product | outer membrane autotransporter |
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| Protein accession | YP_001807307 |
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| Protein GI | 172059655 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3468] Type V secretory pathway, adhesin AidA |
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| TIGRFAM ID | [TIGR01414] outer membrane autotransporter barrel domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.367872 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 0.807711 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGCTTTC ACCGCACCGC GGTGGACACC ACTTCAAAAA AGAGAGAGGG GCTTGTCGTG
AATCACTCAT TTCGATCGAT ATGGAGCGAA GCCGCCGGCT GCTGGGTGGC GGTCGCGGAA
ACGGCCCGGG CCCGCGGCAA GCGTTCGGGC GGCGAATCGG GCGCAAGCCG CCGTGCCGGC
CGCATGGCGG GCCGCCGCTC GCCGCTGCGT GTCGCCGCGC TCGGCGCGGC ACTGGCCGCG
CTGTCGGCCG GCTCCGCGTA CGCATCGACG TGCGGCGACG GCTCCGCGGT CACGAACGGC
GGCGCTTGCG CGCTCGGCAG CTACAGCCCG ACCGTGAACG ACAACCTGGC CGGCGCCACG
ACCGTGTCGG GCGGCGACAC GGTCGGCGTG ACGGGTGCAT GGACGAGCGC CGCCGGCGAC
CCCGGCTATA CGCTCACGCC GATCGGCAAT ACGTCGATCG TGTCGGGCAA CCCGAACCAG
CCGCTGCTGT CGCTCGGCGG CAAGACGCAG AGCGTCAGCA CGCCCGACTC CATCACGGGC
ACCCATACTT CGATCGCCAC GTACGACTCG TCCGCGTTCG CCGCGTCGAC GGCGGGCGCG
ACCAACGTGC CCGTCTACCA GGACGTGAAC GGCAACCAGT ACGTGAACCT TCGGCTCGGC
ACCGTCGACA GCACCGGCGG CACGCTGAAC GTGTCGATCG GCAATCCGGC GAACGCGCCC
GGCGCGGCCG GCAACGCGAT CTCGATCGCG CCGAAGCAGA CCGACCTGAC CTTCGCGGAC
GGCACCGGCT CGGCAAAAAG CGTCGTCAGC TGGAATTCGC GCAACCAGAT CTGGCTCGGC
ACCGGCGACT ATCTCGCGAG CGGCGGCGCC GTCGGCCAGG TCCAGCTCGA CGTGCCGACC
TATGCGGGCA CCTTCACCGC GTTCGACGGC AGCACGTGGA CCGTGAGCGA CGCCGCGTCG
CTCGCCGCGT ACAACGACTT CCTCGCGCGC TCCGTGCGCA GCGGCGCGCT CGGCTCGCAA
GCGGCGTACG ACACCGCGTT CGGCCAGGCC GTCACCTTCA CGCAGGAAAC CTTCCAGTAC
GCGAACAACG TGTCGGCCGG CGACAAGAAC ACGCTGCCGA TCGACCATCT GTCGGTGATG
CACGGCACGG GCGCGAACGC GACGCTGCAG ATCGGCAAGG ACGGCCAGAT CGACTTCCGC
GGCACCAACA CGATCGAATC GAGTTCGGCC ATCCTCGCGG AAAACGGCGC GCACTTCGTC
AACGACGGCC GCCTGTCCGG CGACTTCACG CTGGTGCGCC TGCTCTCCGG CGCGAGCGGC
GTCAACAACG GGGTGATCTC GGCCGGCTAC GCGTCCGGCG ACAACGTCGA TACGAGCAGC
AGCACGCCGC CCGACAACTT CGGGTTCCAC GCGTACACCG AGGGCAACGG CGTCTATGCA
AGCGGCCCGG GCACGACGTT CGTGAACAAC GGCGTGATGA ACGTCGGCGC CTGGACGCTC
GACGGCAACC GCCCCGACCT GCAGAACTAC GCGGTGGCCG TGACGGGCGG CGCGAACGCG
TCGAACGCCG GCACGATCAA CGTCGGCGTC AACGCGACGA CGCTCGACAG CCAGGTGATC
GGCGGCTTCG CGGCCGGCGG CACCTTCACC AACGAGGCCG GCGGCACGAT CCAGCTCGGC
CGCGAGGCCC AGTACGCGCC GGGGGCAGCG GCGAACGACG TCGCGCTGTC CGCGCGCGCG
TACGGGATCC TGCTCGGCGC GTCGGGCACC GCCAGCAACC TCGGTTCGAT CGTGATCGGC
TCGCAGACCC AGAACGGCGC CGGGATGGCG AGCCTCGGCT CGTCGTCCGG CACGCTGCGC
AACGCGGGCT CGATCGTCGT GAACGGCGCG GCGCCCGGCA CGCCGCTCGC GAACGTCGGC
ATGCTCGCGG CCAACACGGC CGCGACCGTC ACCAACACGG GCACGATCAC GCTGAACGGC
GTGAACGGGA TCGGCATCAT GGTGGTCGGC ACCTCGACGT CGACGGCCGC GACGTCGACC
GGCACGATCA ACGTGGCCGG CGGGCTCGAC CCGGCATCGG ACACGCGCAA CTACGGCGTG
TGGGCCGAAG GATCGCGCGC GCAGGCCACG GTCGACGGCG CGCTCAACCT GACGGGCAAC
GGCGCGATCG GCGTCCATGC GCGCGCGGGC GCGACCATCG ACGTCGGCGC GAACGCGGTG
CCCCGCTTCA TGTCGGGCAC GAACCAGATC GGCTTCTATG CGTATGGCGC GGGCTCGAGG
ATCAACGTCG CCGCGCAGCA CCTGAGCGTC GATACCGACG ATTCGACGCT GTTCCGGATC
GCGGGCGGCG CGGCCTATAC GGGCGCATCG GCCGCCGGCA CGCTGACGAC GGACTTGACC
GGCCAGCGTG CGCGCGGCGT GCTCGCGACC GGCGCCGGCA CGACGCTGGC GACCGGCAAC
GCCACCTACA ACGTCAACGG CGCGAACGGC ATCGCGGTGG CGGTCGAAGG TGGCGCGCAG
GGCTCGATCG ACGCCGGCGC GACGATCAAC CTGAATGCGG CCGGCGCGAT GGCGGGTGTC
GTCGACGGCC AGGCGCACGA CCTCGCCGGC GCGAATGCCG GCGCGCCGGT CGCGACGACA
CTGGCCAACG CTGCCGCGGT CACCTCGTCG AGCGCGGGCG TGACGGGTTT CGTCGCGCGC
AATCTCGGCA CGCTCGAGAA CCGCGGCTCG GTGCTGCTGA CTGGCGCCGG TTCGACGGGC
GTCGTGATCG GCACGCTCGG CACGGTGAAC AACGCGTCGG CGATCCGCGT GTCGAACGGC
ACCGGCACGC TCGTGCAGGG CGCGTCGGCA ACGCTCGCCA ACGCGGGCAC GATCGAGGCC
GACGACGGCG TCGCGGGCGT GCACCTGACC GGCGCGGGCG CGTCGGTCGC GCTGTCGGGC
GCGGGCACGG TCATCGCCAA CGGCAGTGCC GACGGCGTGC TGGTCGATTC GAGCGTCGCG
GACGGCTGGA TCGCGGCCGG CGCGACGTCG ATCGTGGTGG GCGGCGCCGG CAAGGGCATC
GACAACCTCG GCGCGAACAC GACGATCGTG CTGTCGGGCA CGCAGATCGG CACGACCGGC
AACGGCGCCG ACGGGCTCTC GTCGACGGGC GCCGGCGCGC GCATCGCGAC CGATGCGGCG
ACCGTCGTGC GCACCGCCGG CGACAACGCA CGCGGGCTCG TGGTGGCGGG CGCGGATTCG
ACGCTCGCGG CCAACGGCAC GACGGTCGCG ACGACGGGCG CCGGCGCGCA CGCGATCGTC
GCGGGCAGCG GCGCGAGCGC GTGGCTGTCG GACGCGAAGG TCTCCACGGC GGGTGCGGCG
GCCGACGGCC TCGTCGCGCA GAACGGCGGC CGCATCGGCG ACACGGGTTC GTCGATCGCG
AGCGCGGCCG GCAGCGGCGC GAACGTCGAC GGCGGCGGCG TGCTCGCGCT GACCGGCACG
ACGCTCAAGG GCGCGACCGC CGGCGTGCTG AGCACCGACA CGCTCGCGAC CGGCGCGACG
AGCGCGGTGC GGGTCGACGG CGGCAGCGTC GCGTCCGTCG CCGGGCCGGC GTTCGCCGCA
CGCAGCGGTA CGGTCGACAT CGCGGTGCGC AACGGCACCG TCGTGACGGC CGGCAACGGC
ACGCTGCTGG ACCTCGCGAA CGGCAGCACC GCGACCTTCA ACGCATCGGC GGTCGACCTG
AGCGGCGACA TCATCTCGGA CGCGTCGAGC ACCGGCAACG TGCTGCTGGC GAACGGCACG
ACGCTGACCG GCAAGATCGA CCCGGTCGCG CTGACCGTCG ACGGCACGAG CACGTGGCGC
ATGACCGGCA ACTCCGTGCT GAGCAGCCTG AACAACGCGG GCCTGGTTGC ATTCGCCGCA
CCGTCCGGCG CGCCGACGGC GGCAGGCAGC TACCGGACGC TGACCACCGG CAGCTACGTC
GGCTACGGCG GCACGATCTC GCTGAACACC TACCTCGGCG CGGATGCGTC GCCGACCGAC
CGGCTGATCG TGAACGGCGG CACCGCGAGC GGCACGACGG GCCTGAAGAT CGCGAACACG
GCCGGCACCG GCGCGCAGAC GACCGGCGAC GGGATTCCGG TGGTCGTCAC GGCCAACGGC
GGCACGACCG CCGCGTCGGC GTTCCATCTC GCGGGGCCGG TGCAGGCCGG CGCATACGAA
TACCGGCTCT ATCGCGGCGG ACAGAGCGAT GCGAACGGCT GGTACCTGCG CTCGCAACTC
GACTCGACCG ATCCTGACGA TTCGATTCAT CCGTCCGGCA ACGGGAACAC CAATGGCAAT
GGCAATGGCA ACGGCGGCAA TCTCGCGTAT CGCCCGGGCG TCACAGGCTA TGCGATGACG
CCGCTGCTGA ACGCCGACTA TGGCTTCTCC ACGCTCGGCA AGCTGCACGA ACGCGTCGGC
GACATCGACA ACCTCGAGAA GCAGGCGCCG GGCAACCGCG ACGGCGTGTG GGGCCGCATT
GGCGGACAGA GCCTCGATGC GAACGCGGGC CGCTTCGCGG CCGACGAGCG CACGTTCTTC
GCGCAGTTCG GCAAGGACTG GACGCTCGAG CAGGCTGCGG CGGGCGGCAG CACGCATGCG
GGCGTGACGG CGAGCATCGG CGTCGCGAAC GCGAGCTTCG ACGACATGGC GCGTGCCGAT
ACGCCGGGCC TGTCGACCTC GACGGGCTCG GTCGAGATGC ATGCGCAGAG CGTCGGCGGC
TACTGGACGC GCTATCTCGC CGACGGCACT TACTTCGACA GCGTCGGCCA GGTCACTCAC
TACGGCAACC GCTATCGCGA CAGCTACGGC AACGACGCAT CGCAGAACGG TTTCGGCATC
GCGCTGTCGC AGGAAGTCGG CAAGCCGTTC GTGATCGGCG GCACGCCGAT CGCGGTCGAG
CCGCAGGCGC AGCTGATGTA CCAGTACCTG AAACTGAACG GGTTCAACGA CAACGTGTCG
GCCGTATCGG GCACCACGAC GAACGCGTTG CGCGGGCGCG TCGGCGTGCG GATCTTCCGG
CCGAACCTCG ACGCGAACGC GGGCGGCGGC GCCGCGACGC CGTACTTCAC GGCCGACGTG
CTGCACGACT TCCTGTCGCC GGGCCAGACG GTCGTCGGCG GCACGCCGTT CGCGACGCAC
CTGGGCCGCA CCTGGTACGA GCTGGGCCTT GGCGTGACCG CTGGATTCGG CAAGTCGGGC
GAGCTGTACG CGAACGTGAA ATATGCGCGC AACCTCGGTG GCGAGTACCG GCGCGGCGTC
ACCGGGCAGG TCGGTTACCG CTACAGCTGG TAA
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| Protein sequence | MRFHRTAVDT TSKKREGLVV NHSFRSIWSE AAGCWVAVAE TARARGKRSG GESGASRRAG
RMAGRRSPLR VAALGAALAA LSAGSAYAST CGDGSAVTNG GACALGSYSP TVNDNLAGAT
TVSGGDTVGV TGAWTSAAGD PGYTLTPIGN TSIVSGNPNQ PLLSLGGKTQ SVSTPDSITG
THTSIATYDS SAFAASTAGA TNVPVYQDVN GNQYVNLRLG TVDSTGGTLN VSIGNPANAP
GAAGNAISIA PKQTDLTFAD GTGSAKSVVS WNSRNQIWLG TGDYLASGGA VGQVQLDVPT
YAGTFTAFDG STWTVSDAAS LAAYNDFLAR SVRSGALGSQ AAYDTAFGQA VTFTQETFQY
ANNVSAGDKN TLPIDHLSVM HGTGANATLQ IGKDGQIDFR GTNTIESSSA ILAENGAHFV
NDGRLSGDFT LVRLLSGASG VNNGVISAGY ASGDNVDTSS STPPDNFGFH AYTEGNGVYA
SGPGTTFVNN GVMNVGAWTL DGNRPDLQNY AVAVTGGANA SNAGTINVGV NATTLDSQVI
GGFAAGGTFT NEAGGTIQLG REAQYAPGAA ANDVALSARA YGILLGASGT ASNLGSIVIG
SQTQNGAGMA SLGSSSGTLR NAGSIVVNGA APGTPLANVG MLAANTAATV TNTGTITLNG
VNGIGIMVVG TSTSTAATST GTINVAGGLD PASDTRNYGV WAEGSRAQAT VDGALNLTGN
GAIGVHARAG ATIDVGANAV PRFMSGTNQI GFYAYGAGSR INVAAQHLSV DTDDSTLFRI
AGGAAYTGAS AAGTLTTDLT GQRARGVLAT GAGTTLATGN ATYNVNGANG IAVAVEGGAQ
GSIDAGATIN LNAAGAMAGV VDGQAHDLAG ANAGAPVATT LANAAAVTSS SAGVTGFVAR
NLGTLENRGS VLLTGAGSTG VVIGTLGTVN NASAIRVSNG TGTLVQGASA TLANAGTIEA
DDGVAGVHLT GAGASVALSG AGTVIANGSA DGVLVDSSVA DGWIAAGATS IVVGGAGKGI
DNLGANTTIV LSGTQIGTTG NGADGLSSTG AGARIATDAA TVVRTAGDNA RGLVVAGADS
TLAANGTTVA TTGAGAHAIV AGSGASAWLS DAKVSTAGAA ADGLVAQNGG RIGDTGSSIA
SAAGSGANVD GGGVLALTGT TLKGATAGVL STDTLATGAT SAVRVDGGSV ASVAGPAFAA
RSGTVDIAVR NGTVVTAGNG TLLDLANGST ATFNASAVDL SGDIISDASS TGNVLLANGT
TLTGKIDPVA LTVDGTSTWR MTGNSVLSSL NNAGLVAFAA PSGAPTAAGS YRTLTTGSYV
GYGGTISLNT YLGADASPTD RLIVNGGTAS GTTGLKIANT AGTGAQTTGD GIPVVVTANG
GTTAASAFHL AGPVQAGAYE YRLYRGGQSD ANGWYLRSQL DSTDPDDSIH PSGNGNTNGN
GNGNGGNLAY RPGVTGYAMT PLLNADYGFS TLGKLHERVG DIDNLEKQAP GNRDGVWGRI
GGQSLDANAG RFAADERTFF AQFGKDWTLE QAAAGGSTHA GVTASIGVAN ASFDDMARAD
TPGLSTSTGS VEMHAQSVGG YWTRYLADGT YFDSVGQVTH YGNRYRDSYG NDASQNGFGI
ALSQEVGKPF VIGGTPIAVE PQAQLMYQYL KLNGFNDNVS AVSGTTTNAL RGRVGVRIFR
PNLDANAGGG AATPYFTADV LHDFLSPGQT VVGGTPFATH LGRTWYELGL GVTAGFGKSG
ELYANVKYAR NLGGEYRRGV TGQVGYRYSW
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