Gene BamMC406_0563 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBamMC406_0563 
Symbol 
ID6176716 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia ambifaria MC40-6 
KingdomBacteria 
Replicon accessionNC_010551 
Strand+ 
Start bp634705 
End bp635715 
Gene Length1011 bp 
Protein Length336 aa 
Translation table11 
GC content64% 
IMG OID641680311 
Productglyceraldehyde-3-phosphate dehydrogenase, type I 
Protein accessionYP_001807276 
Protein GI172059624 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG0057] Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase 
TIGRFAM ID[TIGR01534] glyceraldehyde-3-phosphate dehydrogenase, type I 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value0.247809 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones20 
Fosmid unclonability p-value0.364642 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACGATCC GCGTCGCAAT CAACGGCTAC GGCCGCATCG GCCGCAACAC GCTGCGCGCG 
TTTTATGAAA ACGGCAAGAA GCACGATCTC GAGATCGTCG CGATCAACGA CCTGGGCGAC 
GCGAAGACCA ACGCGCACCT GACCCAGTAC GACACCGCGC ACGGCAAGTT CCCGGGCGAC 
GTGTCGGTCG ACGGCGACTA CCTCGTCGTG AACGGCGACA AGATCCGCGT GCTGGCCAAC 
CGCAACCCGG CGGAACTGCC GTGGGGCGAG CTCGGCGTCG ACGTCGTGAT GGAATGCACG 
GGCTTCTTCA CGACGAAGGA AAAGGCGAGC GCGCACCTGA AGGGCGGCGC GAAGAAGGTG 
ATCATCTCGG CGCCGGGCGG CAAGGACGTC GATGCAACGA TCGTCTACGG CGTGAACCAC 
GACGTGCTGA AGGCCGAGCA CACCGTCATC TCGAACGCAT CGTGCACGAC GAACTGCCTC 
GCGCCGCTCG TCAAGCCGCT GAACGACCGC ATTGGCCTCG AAACCGGCCT GATGACGACG 
ATCCACGCTT ACACGAACGA CCAGGTGCTG ACCGACGTCT ATCACGAAGA CCTGCGTCGC 
GCGCGTTCGG CCACCCACAG CCAGATCCCG ACGAAGACGG GCGCTGCGTC GGCCGTCGGC 
CTCGTGCTTC CGGAACTGAA CGGCAAGCTC GACGGCTACG CGATTCGCGT CCCGACGATC 
AACGTGTCGA TCGTCGACCT GTCGTTCATC GCGAAGCGCG ACACGACGGT CGAGGAAGTC 
AACGCGATCA TGAAGGAAGC ATCGGAAGGC GCGCTGAAGG GCATCCTCGG CTACAACGAC 
GCGCCGCTGG TGTCGATCGA CTTCAACCAC AACCCGGCTT CGTCGACGTT CGACGCCACG 
CTGACCAAGG TGTCGGGCCG CCTCGTCAAG GTGTCGAGCT GGTACGACAA CGAGTGGGGT 
TTCTCGAACC GCATGCTGGA TACGGCAGTC GCGTTCGCGA ACGCGAAGTA A
 
Protein sequence
MTIRVAINGY GRIGRNTLRA FYENGKKHDL EIVAINDLGD AKTNAHLTQY DTAHGKFPGD 
VSVDGDYLVV NGDKIRVLAN RNPAELPWGE LGVDVVMECT GFFTTKEKAS AHLKGGAKKV 
IISAPGGKDV DATIVYGVNH DVLKAEHTVI SNASCTTNCL APLVKPLNDR IGLETGLMTT 
IHAYTNDQVL TDVYHEDLRR ARSATHSQIP TKTGAASAVG LVLPELNGKL DGYAIRVPTI 
NVSIVDLSFI AKRDTTVEEV NAIMKEASEG ALKGILGYND APLVSIDFNH NPASSTFDAT 
LTKVSGRLVK VSSWYDNEWG FSNRMLDTAV AFANAK