| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_0437 |
|---|
| Symbol | |
|---|
| ID | 6176184 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010551 |
|---|
| Strand | - |
|---|
| Start bp | 493218 |
|---|
| End bp | 493814 |
|---|
| Gene Length | 597 bp |
|---|
| Protein Length | 198 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 641680179 |
|---|
| Product | 3-octaprenyl-4-hydroxybenzoate carboxy-lyase |
|---|
| Protein accession | YP_001807150 |
|---|
| Protein GI | 172059498 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0163] 3-polyprenyl-4-hydroxybenzoate decarboxylase |
|---|
| TIGRFAM ID | [TIGR00421] polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 0.235503 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCATCTC CCAGCGCGCC GCCACGCCGG CTGATCGTCG CGATCACCGG CGCCACCGGC
GCGGTCTACG GCGTGCGGCT GCTCGAATTG CTGCGCGCCG CCGGCGGCGT CGAAACGCAT
CTGCTCGTTT CGAACGCCGG CTGGCTCAAT ATCCAGCATG AACTGAAGCT GTCGAAGGCC
GAGGTCGAAA GCCGTGCGGA TGTCGTGCAT TCGGTGCGCG ATGTCGGCGC GACGATCGCG
TCGGGCTCGT TCGCGACCGA CGGAATGGTG ATCGCACCCT GCTCGATGAA GACGCTTGCG
AGCGTCGCGC ACGGGCTGTC GGACAACCTG ATCACGCGCG CGGCCGACGT CACGCTGAAG
GAACGCCGCC GTCTCGTGCT GATGGTGCGC GAAACGCCGT TCAACCTCGC GCATCTGCGC
AACATGACCG CCGTGACCGA AATGGGCGGC ATCGTGTTCC CGCCGCTGCC CGCGTTCTAC
GCGATGCCGA AGACGATCGA GGAACTCGTC GACCAGACGG TCACGCGCGT GCTCGACCTG
TTCGCGCTCA GTGCGCCGAT GACGACGCCA TGGGCCGGCA TCCGGCCCGC ACAGTAA
|
|---|
| Protein sequence | MASPSAPPRR LIVAITGATG AVYGVRLLEL LRAAGGVETH LLVSNAGWLN IQHELKLSKA
EVESRADVVH SVRDVGATIA SGSFATDGMV IAPCSMKTLA SVAHGLSDNL ITRAADVTLK
ERRRLVLMVR ETPFNLAHLR NMTAVTEMGG IVFPPLPAFY AMPKTIEELV DQTVTRVLDL
FALSAPMTTP WAGIRPAQ
|
|---|
| |