| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_0335 |
|---|
| Symbol | |
|---|
| ID | 6177585 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010551 |
|---|
| Strand | + |
|---|
| Start bp | 380460 |
|---|
| End bp | 381008 |
|---|
| Gene Length | 549 bp |
|---|
| Protein Length | 182 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 641680080 |
|---|
| Product | 2'-5' RNA ligase |
|---|
| Protein accession | YP_001807052 |
|---|
| Protein GI | 172059400 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG1514] 2'-5' RNA ligase |
|---|
| TIGRFAM ID | [TIGR02258] 2'-5' RNA ligase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 0.19642 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACGGCG ACCGGCTCCG TGCGTTCGTC GCGCTGATGC CCGATACGGC ATCGCGCGAC
GCGCTGCACG CGCTGCCGGT CACGCGCGGC GCACGGCGCA CGCTGCCCGC GCAACTGCAC
GTGACGCTTG CGTTCATCGG CGCGATCGAA CGTGCGCGGT GCGACGCGCT GGCCGCGCGG
CTGCCGGCGC TTGCGAGCGC GCATGCGCTG CCGTTGCAGC GGGTCGAGCG GATCGCGTGG
TGGCCGAGCT TGCCACGCGC GAGGCTGATC GTCGCGGAAC TCGCCGCCGA TTCCGCCTGT
GCGGCGCTGA ATGCCGATTT ATCCGCGCTG TTGCGCGAGC TGGGCGTGCC GGCCGACCGC
CGGCCGTTCC GGCCGCATGT GACGCTCGCG CGGCTGCCGC GCGATGCCGA CGGACAGCCT
GCACACGGCG GCGCGACCGG CCGGCCGGTC GCGGTGCGCT TCGTCGCGCT GACGCTGTTC
GAAAGCCGCC TGTCGCACGA CGGTGTGTCG CATGTGCCGA TCGTGTCGGT GCCGATCGGG
CGGGCGTAG
|
|---|
| Protein sequence | MNGDRLRAFV ALMPDTASRD ALHALPVTRG ARRTLPAQLH VTLAFIGAIE RARCDALAAR
LPALASAHAL PLQRVERIAW WPSLPRARLI VAELAADSAC AALNADLSAL LRELGVPADR
RPFRPHVTLA RLPRDADGQP AHGGATGRPV AVRFVALTLF ESRLSHDGVS HVPIVSVPIG
RA
|
|---|
| |