| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_0136 |
|---|
| Symbol | |
|---|
| ID | 6176062 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010551 |
|---|
| Strand | + |
|---|
| Start bp | 159152 |
|---|
| End bp | 160186 |
|---|
| Gene Length | 1035 bp |
|---|
| Protein Length | 344 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 641679871 |
|---|
| Product | AraC family transcriptional regulator |
|---|
| Protein accession | YP_001806854 |
|---|
| Protein GI | 172059202 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG2207] AraC-type DNA-binding domain-containing proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 0.421532 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAGCAAC GAGTGGAGTG CACGGCCGAA CCGACGGCCG AGGACACGCG GTGCAGCGCG
CAGGGTGACG ACGCGCTGGC CGGCCAGGCC GTGGTCAGCG TCGCGCATGA CGCCGACGAG
CAGGCGCGCA ACCTGATCGG CTGGCGGCAG ACCTACGACC AGCTCGCGGC CGGCCGCTTC
GTCGGCACGC TGACCGAGCT GCCGCTCGAC ACGATGAAGC TGTTTCGCGA ATCGACCAGC
CACCTGCTGC GCCAGGCGTG CGAGGTGCGC GGCGACGCGT ACTGGTTCGG CATCCCGCTG
GTGAGCGACG GCAGCGCGCG CGTCGATGCA TGCCGTATCG GCCCCGGCGG GCTCGCGTTC
CGGCCCGGCA ACGTCGAATT CGAATTGCTG ACGCCCGCGC AGTTCTCGAT CTACGGCGTC
GTCGTGCGCG GCGACGTGTT GCGCCGTTAC GCAGAGGAAG TCGAGCATCG CGCGCTCGAC
GAGCGGCTGT TCACGCAGCA CGTGATTCAG GTTGGCGACA CGCGGCTCGC GCGCCTGTGC
GCGCTGCTCG GCCGCCGGCT CGACGGCGCG GCGGCCGTGG GCGGGCCGCT GCCCGACGCG
CAGCGCGACG AGCTGCAGGC CGAGGTGCTG GGCGCGCTGT TCGATGCATG CGCGCAACCG
GCGGACGACG GTGCGGGCGG CGCGCCATCG ACCCGGCGCT GGATCGTCGA GCAGGCGCGC
GAGTACGTGC TGGCGCACCG CACGCGCCCG GTCGGCGTGC CCGAGCTGTG CGAGCAGTTG
CACGTGAGCC GGCGCACGCT GCAGTACTGC TTCCAGGACG TGCTCGGCAT GGCGCCCGCG
ACCTACCTGC GCACGCTGCG GCTGAACGGC GCGCGGCGCG ACCTGTGCGG GCGGGCGGCC
GGTTCGGTGC AGGACGTCGC GGAGGCGTGG GGCTTCTGGC ACCTGAGCCA GTTCGCGACC
GACTACCGGC GGCTCTTCGG CAAACGGCCG TCGGAGACGC TGCGCGATCG CGCCGTGATG
GTCGCGGCCG GGTGA
|
|---|
| Protein sequence | MEQRVECTAE PTAEDTRCSA QGDDALAGQA VVSVAHDADE QARNLIGWRQ TYDQLAAGRF
VGTLTELPLD TMKLFRESTS HLLRQACEVR GDAYWFGIPL VSDGSARVDA CRIGPGGLAF
RPGNVEFELL TPAQFSIYGV VVRGDVLRRY AEEVEHRALD ERLFTQHVIQ VGDTRLARLC
ALLGRRLDGA AAVGGPLPDA QRDELQAEVL GALFDACAQP ADDGAGGAPS TRRWIVEQAR
EYVLAHRTRP VGVPELCEQL HVSRRTLQYC FQDVLGMAPA TYLRTLRLNG ARRDLCGRAA
GSVQDVAEAW GFWHLSQFAT DYRRLFGKRP SETLRDRAVM VAAG
|
|---|
| |