Gene BURPS668_A1179 details

Gene Information

• Locus tag: BURPS668_A1179
• ID: 4887070
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Burkholderia pseudomallei 668
• Kingdom: Bacteria
• Replicon accession: NC_009075
• Strand: +
• Start bp: 1120729
• End bp: 1121349
• Gene Length: 621 bp
• Protein Length: 206 aa
• Translation table: 11
• GC content: 67%
• IMG OID: 640131118
• Product: hemolysin III
• Protein accession: YP_001062176
• Protein GI: 126442524
• COG category: [R] General function prediction only
• COG ID: [COG1272] Predicted membrane protein, hemolysin III homolog
• TIGRFAM ID: [TIGR01065] channel protein, hemolysin III family

Plasmid Coverage information

• Num covering plasmid clones: 52
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGCATGTCG GTGAGCGTTT CAACAGCATT TCCCATCTCG TCGGCGCGGT GCTGTCGGTG 
GCGGGGCTCG CCACGCTCGT GACGATGGGC GCGCTCGACG GCGACGCGTA CAAGGTGGTG 
AGCTTCAGCG TCTACGGCGC GATGCTGTGC GTGCTCTACG CGATCTCGAC GCTCTATCAC 
AGCGTGCGCG GCCCGCGCCT GAAAGCCATC CTGCAGAAAT GCGATCACGC GGCCATCTAT 
CTGCTGATCG CGGGCAGCTA TACGCCGTTT ACGCTCGTCA CGCTGCGCGG GCCGTGGGGA 
TGGTCGCTGT TCGGCGTGAG CTGGGGGCTC GCCGCGTTCG GCATCGTGCA GGAGCTCACG 
CTCGGGCGGC GCACCCGCAT CGTATCGATG GCGCTGTACG TGCTGATGGG CTGGCTCGCG 
CTCGTCGCGA TCCGCCCGCT CGTCCATGCG CTGCCGGCGG CGGGAACGGC GTGGCTCGTC 
GCGGGCGGCG TCATCTATAG CGCCGGCATC TACTTTTTCG TCAACGATGA GCGCATCCGC 
CACGGGCATG GCATCTGGCA CCTGTTCGTG CTCGCGGGCA GCCTGTGCCA GTTCGTCAGC 
GTCGCCGGCT ACGTCGCGTG A 

 

Protein sequence

MHVGERFNSI SHLVGAVLSV AGLATLVTMG ALDGDAYKVV SFSVYGAMLC VLYAISTLYH 
SVRGPRLKAI LQKCDHAAIY LLIAGSYTPF TLVTLRGPWG WSLFGVSWGL AAFGIVQELT 
LGRRTRIVSM ALYVLMGWLA LVAIRPLVHA LPAAGTAWLV AGGVIYSAGI YFFVNDERIR 
HGHGIWHLFV LAGSLCQFVS VAGYVA