Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | BURPS1710b_A0420 |
Symbol | |
ID | 3693617 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia pseudomallei 1710b |
Kingdom | Bacteria |
Replicon accession | NC_007435 |
Strand | - |
Start bp | 587396 |
End bp | 588214 |
Gene Length | 819 bp |
Protein Length | 272 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 637730674 |
Product | type III secretion protein SpaR/YscT/HrcT |
Protein accession | YP_335579 |
Protein GI | 76819022 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG4791] Type III secretory pathway, component EscT |
TIGRFAM ID | [TIGR01401] type III secretion protein SpaR/YscT/HrcT |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.0472416 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | TTGACGCCTG CGCTTTTTGC TTTGCAGGGT TGGGCCGGCG CGCTGCTCGA TGATGTCACG CTGCTCGCCA TCTGCTCGGT TCGCCTCTAT ATCGTGATGT CCGTTTTCCC GCCGACGGCT GACGGGCTGT CGCAAGGCGT CGTGCGCAAT GCGCTCGTGA TCTTGTTCGG TTCGTACGTC GCGTACGGAC AACCGGCGGG GTTCGTGCAG ACGCTGCACG GCACGCCGCT GATCGTGACC GGCTTGCGAG AGGCCGTGAT CGGCGTCGTC CTCGGTATTG CCGCGTCCAC GGTGTTCTGG GCGATCGAAG GCGCAGGTTG TTATATCGAC GATCTGACGG GATACAACAA CGTGCAGATG ACGAATCCCG CGCGTGGGGA GCAGTCGACG CCGACGGCGA CGCTGCTCAC GCAGGTCGCG ACGGTCGCGT TCTGGACGTT CGGGGGAATG ACCTTCCTGC TCGGTACGCT ATACGAATCG TATCGATGGT GGCCGATCAC GCTGACCTTC CCCCGGATGC CGGCATTGAT CGAGGCGTTC GCCGTGAGTC AGACCGACAG CTTGATGCAA ATGGTCACGA AGCTCGCCGC GCCGATGATG CTGGTTCTTC TGCTGATCGA TTTCGCCTTC GGATTCGCCG CGAAGTCTGC TTCGAAGCTC GATCTCATGG GGTTGAGTCA GCCTGTCAAG GGCGCGGTGA CGGTGCTGAT GCTCGCATTG TTCGTCGGTA CGTTCGTCGA TCAAGCGCGC GAGCAGGTGA CGCTGTCGAC GCTATCGAAA CAGCTGCGCG AGTGGTCGCA CGCCATGTCG CGCGGCTGA
|
Protein sequence | MTPALFALQG WAGALLDDVT LLAICSVRLY IVMSVFPPTA DGLSQGVVRN ALVILFGSYV AYGQPAGFVQ TLHGTPLIVT GLREAVIGVV LGIAASTVFW AIEGAGCYID DLTGYNNVQM TNPARGEQST PTATLLTQVA TVAFWTFGGM TFLLGTLYES YRWWPITLTF PRMPALIEAF AVSQTDSLMQ MVTKLAAPMM LVLLLIDFAF GFAAKSASKL DLMGLSQPVK GAVTVLMLAL FVGTFVDQAR EQVTLSTLSK QLREWSHAMS RG
|
| |