| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BURPS1710b_0325 |
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| Symbol | rpoD |
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| ID | 3690869 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia pseudomallei 1710b |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007434 |
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| Strand | - |
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| Start bp | 339625 |
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| End bp | 341073 |
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| Gene Length | 1449 bp |
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| Protein Length | 482 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 637726781 |
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| Product | RNA polymerase sigma factor |
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| Protein accession | YP_331741 |
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| Protein GI | 76812098 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.00531206 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAGTCT CAGCGCGCGA ATTGCGCTAC GAACAGGGCA TCGACCGGTT GCTCGAACTT
GCCGGCGCTC GCGACGACAC GGAATACGCC GATGTCGCCG ACGAGTTCGC GAGCGCGCCG
TCCAGCGCGT TCGCGCATGA TCTCGGCGAG CCCGATTCCC TGGATCACCA AGCATCCGAC
GAAAGCGCAG GCGCCGGCTC GTTCGGCGAC AAGCCGACGC GGCCCGCGCA CGGCGACACC
GATGTCGACA CCGACTGGCG TGACGACGAT GCGCCGCCCT CCGGATCGAA CGACGCCGCG
CCGGTCGACA CCACGGCCTC GACCGATCCG CTCGCGCTCT TCGTACGCCG GATGCACGCG
GTGCCGCTGC TGACGCACGC CCAGGAAATC GCGCTCGCCG CCGAAATCGA GGCGGGACGC
GAGCAGGTGC TGCAAGCGCT CGCCGAAGCG CTCGACCGGC TCGACCTCGC GTCGTTGCCG
GCCGATCCGG CGCTTGGCCG TGCGCGCGCC GCGCTGCAGC GCGCACGCGC GCGCGGTGAC
GAAGGCGCGC GCGCGTGTGC CCGCGCGCGC ACGGCGGCAT ACGCGGCGCT CGCCGCTCAC
GGCTGGCCGT CGGCGGAAGT CGACGCGGTG CGGCGGGCAA TGCGCCGGCT GCCGACATCG
CCGGAAAAGA GCGACGCGGG CGCGCAACGT GCGTTCGCGG ACGGCGAAGC GCGCATCTCG
GCCGCGACCG CGCGAATGGC GGAAGCGAAC CTGCGGCTCG TGCTGTCGAT CGCGCGCAAG
TACGCGTCGC GCGGCCTGGA TCTCGCCGAT CTGCTGCAGG AAGGCAACCT CGGCCTGCTG
CGCGCGATCG AGAAATTCGA GCATCGGCGC GGCTTCAAGT TTTCGACGTA TGCGACGTGG
TGGATTCGTC AGGCGATTTC ACGCGCGGTC GCCGACCGCG CACGCACGAT TCGCGTGCCG
GTTCATGTCG GCGACGAAGC GCGCCGCGTG CGCAAGGCCG CCGATCGGAT CGAACGGCGC
AGCGGTGTAA GCGCATCGCT CGCCGAGCTG TCGGAGGCGA CCGGGCTGCC GGCCGAGCGG
CTGCGCGCGG TGCTGACGCT GCCTCGCGAG CCGCGCTCGC TGAACGCGCC GCTAGGCGAT
GACGACCAGG CCGAATTCGG CGACATCGTC GAGGATACGT CGACGCCGAG CCTGTTCGAT
GCGCTCGCCC ACGGGCAGAT GTGCGACGTC GTCACGTCGC TGCTGAAAAC GATGTCCGCG
CAGGAAGCCG ACATCCTGCG CCGGCGCTTC GGCATCGGCG GCGACGAGCC GTGGAGCTAC
GAGCAGATCG CCGCGCGAGC AGGCGTGTCG CGCGAGCAGG TACGCCGCAT CGAGAAGCGC
GCGCTGCAGA CGCTGCGCGT GACGGCCGAA GCGTGCAACG CGCACGACTT CCTCGACGTG
CAGCCGTAA
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| Protein sequence | MKVSARELRY EQGIDRLLEL AGARDDTEYA DVADEFASAP SSAFAHDLGE PDSLDHQASD
ESAGAGSFGD KPTRPAHGDT DVDTDWRDDD APPSGSNDAA PVDTTASTDP LALFVRRMHA
VPLLTHAQEI ALAAEIEAGR EQVLQALAEA LDRLDLASLP ADPALGRARA ALQRARARGD
EGARACARAR TAAYAALAAH GWPSAEVDAV RRAMRRLPTS PEKSDAGAQR AFADGEARIS
AATARMAEAN LRLVLSIARK YASRGLDLAD LLQEGNLGLL RAIEKFEHRR GFKFSTYATW
WIRQAISRAV ADRARTIRVP VHVGDEARRV RKAADRIERR SGVSASLAEL SEATGLPAER
LRAVLTLPRE PRSLNAPLGD DDQAEFGDIV EDTSTPSLFD ALAHGQMCDV VTSLLKTMSA
QEADILRRRF GIGGDEPWSY EQIAARAGVS REQVRRIEKR ALQTLRVTAE ACNAHDFLDV
QP
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