Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | BURPS1106A_A2202 |
Symbol | |
ID | 4906289 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia pseudomallei 1106a |
Kingdom | Bacteria |
Replicon accession | NC_009078 |
Strand | + |
Start bp | 2151501 |
End bp | 2152355 |
Gene Length | 855 bp |
Protein Length | 284 aa |
Translation table | 11 |
GC content | 72% |
IMG OID | 640145307 |
Product | YscJ/HrcJ family type III secretion apparatus lipoprotein |
Protein accession | YP_001076235 |
Protein GI | 126457668 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG4669] Type III secretory pathway, lipoprotein EscJ |
TIGRFAM ID | [TIGR02532] prepilin-type N-terminal cleavage/methylation domain [TIGR02544] type III secretion apparatus lipoprotein, YscJ/HrcJ family |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.357372 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGATCATGA AACCACTCCG TCTCCCGATT TCCGCCGCCG GCGCGCGCCG CGCCGCCCGC CTCGCCGCGC TCGTCGCGTG CGTGGCGCTC TTCGCCGGCT GCCGGCAGGA GCTGTACGGC GGCCTCGCCG AGCGCGACTG CAACGAGATG ATGGCCGCGC TGCTGCAAAA CGGCGTCGAC GCGCAGAAGA AGACGCCCGA CGGCGGCAAG ACATGGACGC TCGCCGTCGA CGACAAGCAG ATCGTCAAGG CGATGGAAGT GCTGCGCGCG CGCGGGCTGC CCGCGACGCG CTACGACGAT CTCGGCGCGC TGTTCAAGAA GGACGGCCTC GTGTCGACGC CGACCGAGGA GCGCGTGCGC TTCATCTACG GCGTGTCGCA GGAGCTGTCG GACACGCTGT CGAAAATCGA CGGCGTCGTC GTCGCGCGCG TGCACATCGT GCTGCCGAAC AACGATCCGC TCGCGCAGGT CGCGAAGCCC TCGTCGGCCT CGGTGTTCAT CAAGTACCGG CCGAACGCGA ATCTCGCGAC GCTCACGCCG CAGATCAAGA ACCTCGTCGT TCATAGCGTC GAAGGGCTGA CGTACGACGA AGTGAGCGTC ACCTCCGTCG CGGCCGATCC GGTCGATCTC GTGTCGGCCG CGCAGCCCGC CGCGCAGAAC TCCCGCGGCG CGACGCTCGT CGGCGTGCTG ATCGCGCTCG CCGTGGGCGG CGCGCTCGCG GCCGCGGGCG GCGCGCTGTG GTGGCGCGCG CGCAAGCGCG GCGGCGGCGC GGGCGCGCAC GGGATCGCCG CGCGGCCGCG CGGCGGCGCC CGCGACGCGA AGGCCGCCGC GCCCCGGCAG GCCGGCGCGC AATGA
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Protein sequence | MIMKPLRLPI SAAGARRAAR LAALVACVAL FAGCRQELYG GLAERDCNEM MAALLQNGVD AQKKTPDGGK TWTLAVDDKQ IVKAMEVLRA RGLPATRYDD LGALFKKDGL VSTPTEERVR FIYGVSQELS DTLSKIDGVV VARVHIVLPN NDPLAQVAKP SSASVFIKYR PNANLATLTP QIKNLVVHSV EGLTYDEVSV TSVAADPVDL VSAAQPAAQN SRGATLVGVL IALAVGGALA AAGGALWWRA RKRGGGAGAH GIAARPRGGA RDAKAAAPRQ AGAQ
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