Gene BURPS1106A_A2176 details

Gene Information

• Locus tag: BURPS1106A_A2176
• Symbol: pilT
• ID: 4903307
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Burkholderia pseudomallei 1106a
• Kingdom: Bacteria
• Replicon accession: NC_009078
• Strand: +
• Start bp: 2130248
• End bp: 2131354
• Gene Length: 1107 bp
• Protein Length: 368 aa
• Translation table: 11
• GC content: 66%
• IMG OID: 640145281
• Product: twitching motility protein PilT
• Protein accession: YP_001076209
• Protein GI: 126456645
• COG category: [N] Cell motility; [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG2805] Tfp pilus assembly protein, pilus retraction ATPase PilT
• TIGRFAM ID: [TIGR01420] pilus retraction protein PilT

Plasmid Coverage information

• Num covering plasmid clones: 3
• Plasmid unclonability p-value: 0.0636197
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAACCAGC ATGCCGCCGC CGCCCCGCTG CGCGATCTCG CGGGCGAAGT GCTCGGCCTG 
ATCGACCTGA AGCAGATGTT TACCGACATC CACATCGAAC AGGACCGCCC CGTCACGATC 
AAGACGCCGC GCGGCTGGGT CGAGACGAGC GACGAACCGG TGCTCCTCGA CGACATGCGC 
CCTCTGCTCG ATGCGATCGA CGAGCACTGG GAGAGCGCGC TGCGCCAGGG CACGCTCGAC 
CGCCCGTTCG TCCTCACGCG CTGCCGGCTG CGCTGCCACG TGTATCGCGC GGGCGGCGGG 
CGCAAGATCG TGATCTCGAT GCGGCGGCTG CCGCTCAGGC CGCTGCCGCT CGAGGAGCTC 
GGCCTGCCCG TCTACGTGCG CTCGATGCTC GACAACACGA AGGGCATCAT CCTCGTCACC 
GGCCCGACGG GCTCCGGCAA GACGACGACG ATCGCTTCGC TGCTCGAGCA CGTCAACGCG 
ACGCGCAACA CGCATATCGT CACGATCGAG GAACCGATCG AATACTATCT GGAGCGCCGC 
CAGTCGATCA TCTCGCAGCG CGAAGTGCCG ACCGACACGC CGAATTTCCC GCACGGGCTG 
CGCGAGGCGC TGCGGCAGAA ACCGGACGTC GTGATGGTGG GCGAGGTGCG CGACGCGCAG 
ACGGCCGACA CGCTGCTGCA GGCGGGCGAA TCCGGGCACC TCGTGCTCGC GACGATGCAC 
ACGGGCAGCG CGGTCAGCGC GCTCAACAAG CTGCTGTCGT TCTTTCCGGT CGAGCAGCGC 
GACCGGCACG CGGTCGCGCT CGCCGAATCG CTGATCGGCA TCGTCTGCCA GAGCCTCGTG 
CCGAGCGCGG ACGGCGAAAG CCTCGTGCTC GCGAGCGAGT TGCTGTTCAA CAACAACAAC 
CAGGTCGCGA AGCTGATCGC GGACCCGACC AAGCTGCACC TCGTCAACGA GTTCCTGCGC 
CGCCGGGAGG ACAACATGTC GCGCTCGCTG AACGACGACC TCGCGGCGCT CGCGGCCCGC 
AACCGGATCA CGACGAAGGA TGCGTTACGG GCCACTTACA ATCGGCTCGA GCTGCATGAA 
ATGATGCAGT CGATTGTTAA TCGATAG 

 

Protein sequence

MNQHAAAAPL RDLAGEVLGL IDLKQMFTDI HIEQDRPVTI KTPRGWVETS DEPVLLDDMR 
PLLDAIDEHW ESALRQGTLD RPFVLTRCRL RCHVYRAGGG RKIVISMRRL PLRPLPLEEL 
GLPVYVRSML DNTKGIILVT GPTGSGKTTT IASLLEHVNA TRNTHIVTIE EPIEYYLERR 
QSIISQREVP TDTPNFPHGL REALRQKPDV VMVGEVRDAQ TADTLLQAGE SGHLVLATMH 
TGSAVSALNK LLSFFPVEQR DRHAVALAES LIGIVCQSLV PSADGESLVL ASELLFNNNN 
QVAKLIADPT KLHLVNEFLR RREDNMSRSL NDDLAALAAR NRITTKDALR ATYNRLELHE 
MMQSIVNR