| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BURPS1106A_A1206 |
|---|
| Symbol | |
|---|
| ID | 4905798 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia pseudomallei 1106a |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009078 |
|---|
| Strand | + |
|---|
| Start bp | 1148208 |
|---|
| End bp | 1149410 |
|---|
| Gene Length | 1203 bp |
|---|
| Protein Length | 400 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 640144312 |
|---|
| Product | outer membrane porin |
|---|
| Protein accession | YP_001075241 |
|---|
| Protein GI | 126456925 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG3203] Outer membrane protein (porin) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCACATCA GAACCTGGAT CGCGGCCGGC GTCGCCGGCG CAGCCGTTGC ACCCGCTTGC
GCGCAAAGCG GCGTCACGCT GTACGGCACG GTGGACACGG GCGTCATCTA TTCGACGAAC
CAGCAGGTCA CGCACGCGGA CGGCAGCACG AGCGGCGGGC ATGCGTGGCA GATGGGCGGC
GGAAACCTCG TGCCTTCGCG ATGGGGATTG CAGGGCACGG AGGCGCTCGG CGGCGGATTG
AAGGCCGTGT TTGCGCTCGA GCAGCAATTC CTGTCGGCGA GCGGGCAGGC ATTGCAGGGC
GGCGCGGCGT TCAGCCGCCA GGCGTGGGTC GGCTTGCGGC ACGACAGATA CGGCACGCTC
GGCGTCGGGC GTCAATACGA TTCGTACACC GATACGCTCG GCGCGTACGT GTCGAGCAAC
AGTTGGGCGA CGCCATATGG CTCGCATCTG GGCGACGTCG ACAATCTGAA TGCGGCGTTC
AACTTCAACA ACGCGATCAG GTTCACGAGC GCGGATTTCC ATGGCCTGAC GTTCGGCGGC
ACGTTCGGCT TCGGCGGCCA GGCGGGGGAT TTCTCCGTGC GTCGCGGCTA TGCGCTCGCC
GTTGCGTACA ACCGCGCACC GGTCTCGTTC GGCATCGGCT ATCTGAACCT GCGGCAGCCG
CTCGATGCGG CACTCGGCGG CGCGAACGGA TACATCGGCG ATTTCGCATG CGGCAACGCG
GGCGCGATGT ACTGCCTGCT GCAGGACGCG GTATCGATGA AGGCGTTCGG CGTCGGCGGA
TCGATTGCGT TCGGCGAGGC GACCGTTGCG CTGACCTATA CGCACACCCG TCTCGGCGAC
AGCGCGTATT TCGCCGCCGC GGCGCGTGCG CAGCGCGCGT CGATCGCGTT CGACATCGCC
GAGCTGAACG CGACATACGC GTTCACGCCG ATGCTGCGCG GCGGCATAGC CTACGTCTTC
AACCGCGCGA AGGCCGACAG CCGAGGCGTG ACGCGTTTTC ATCAGCTGAA CGTGGGCGTG
AACTACAGTT TGTCGAAACG GACGGCGCTG TATGCGGTCG CGATCGGACA GATCGCATCG
GGACGCGGGC TCGGCAGCGA CGCGAACGGC GATCCCGTGA ACTACGCGCA GATTCCCGTA
TTGGCGAACA GCAATTCGAA CCGGCAGCTC GCGATGATGG CGGGGGTAAA GGTGGATTTC
TGA
|
|---|
| Protein sequence | MHIRTWIAAG VAGAAVAPAC AQSGVTLYGT VDTGVIYSTN QQVTHADGST SGGHAWQMGG
GNLVPSRWGL QGTEALGGGL KAVFALEQQF LSASGQALQG GAAFSRQAWV GLRHDRYGTL
GVGRQYDSYT DTLGAYVSSN SWATPYGSHL GDVDNLNAAF NFNNAIRFTS ADFHGLTFGG
TFGFGGQAGD FSVRRGYALA VAYNRAPVSF GIGYLNLRQP LDAALGGANG YIGDFACGNA
GAMYCLLQDA VSMKAFGVGG SIAFGEATVA LTYTHTRLGD SAYFAAAARA QRASIAFDIA
ELNATYAFTP MLRGGIAYVF NRAKADSRGV TRFHQLNVGV NYSLSKRTAL YAVAIGQIAS
GRGLGSDANG DPVNYAQIPV LANSNSNRQL AMMAGVKVDF
|
|---|
| |