| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BURPS1106A_1207 |
|---|
| Symbol | msbA |
|---|
| ID | 4902941 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia pseudomallei 1106a |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009076 |
|---|
| Strand | + |
|---|
| Start bp | 1188679 |
|---|
| End bp | 1190403 |
|---|
| Gene Length | 1725 bp |
|---|
| Protein Length | 574 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 640134437 |
|---|
| Product | lipid A export ATP-binding/permease protein MsbA |
|---|
| Protein accession | YP_001065486 |
|---|
| Protein GI | 126454551 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1132] ABC-type multidrug transport system, ATPase and permease components |
|---|
| TIGRFAM ID | [TIGR02203] lipid A export permease/ATP-binding protein MsbA |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCGCCGCC TCTGGCCGTA TGTGAAACCG CTGGTATGGG TGCTCGTCGC AGGCGTGCTC
GCGATGGCGG CGGTCGCCGC GACGGAAGCC GGAATTCCCG CGCTGCTCAA GCCGCTTCTC
GACCATGGCT TCGGCTCGAA GGGAGACATG ACGACGAAGC TGTACGTGCC TGCGGCGGTC
GTCGGTCTCG CGCTCGCGCG CGCGATCGCG CAATATGCGT CCGGCTATCT GCTGCAGTAC
GTGTCGAACC GCATCCTGCT CGATCTGCGG ATCCAGATGT TCGAGCGGAT GATTCACACC
GGCGTGTCGT TCTTCCAGCG CGAGACGGCA AGCACGGTGA TCAACGCGGT CGTGTTCGAA
GTGAACCAGG TGCTGAGCGT GCTGATGGGC GTGACGATCA CGCTCGTGCG CGATTCGCTG
ACGGTCGTCT TCCTGCTCGG CTATCTGTTC TATCTGAACT GGCGCCTGAC GCTCATCGTC
GCGATTCTGT TGCCGTGCAT CGGCTGGCTC GTCGGCAAGA TCAACCGTCG GCTGCGCCGG
CTGAACCGCG AGCATCAGAC GCTCACGAAC CAGCTCGCGT ACATCGTCGA GGAGACCGTC
GGCGGCTACA AGGTCGTCAA GGTTCATAAC GGCGAACCAT ACGAGATCGG GCGCTTCAAC
GAGCTGAGCC GCAAGCTGCG CGGCTATTCG ATGCGCATGA CGGTATCGGG CGGGCTTGCC
CAGCCGCTCA CGCAGTTCCT CGCATCGATC GCGCTCGCTG TCGTGCTGAC GATTGCGGTC
GTTCAGTCGG CGAACGATCA GACGACGGTC GGCGGCTTCG TCGCGTTCGT GACCGCGATG
CTGCTCATCA TTTCGCCGCT CAAGCATCTG ATGGACGTGA ACCAGCCGCT GCAGCGCGGG
ATGACCGCGG CCGAGCTGAT CTTCGGGCTG ATCGACGAGC CGCGTGAGCC CGAAGGCGGC
GGCAAGCCGC TCGCACGCGC GTCGGGGGCG ATCGAGTTCA GCCATGTGTC ATTCTCTTAC
GGCATGTCGC GCGATGGCCG GCAAACGCTC GACGACGTAT CGTTTACCGT CGCGCCGGGC
GAGATGGTCG CGCTCGCGGG CCCGTCCGGC AGCGGCAAGA CGACGCTCGT GAATCTGCTG
CCGCGCTTCT TCGATCCTTC GTCGGGCTCG GTGCGTGTCG ATGGCGTCGC GCTCCCCGAG
TACAGCCTGC GCGACCTGCG CAATCAGATT GCGATGGTGA GCCAGGACGT CGTGCTCTTC
AACGATACGA TCGCCGCGAA CGTCGCGTAC GGCCAGGCGC CCGAACGCGA CCGCGTGGAG
GCGGCACTGC GTGCGGCGAA TCTATGGGAA ACCGTCACCG CGATGCCCGA CGGCATCGAT
ACACTCGTCG GCGACAACGG GATGCGGCTG TCGGGCGGCC AGCGCCAGCG GCTCGCGATC
GCCCGTGCGA TCTACAAGGA TGCGCCGATC CTGATTCTCG ACGAGGCGAC GTCCGCGCTC
GATTCCGAAT CGGAGCGGCA CGTGCAGGCG GCGCTCGAGA CGCTGATGAA GGGGCGCACG
ACGCTCGTGA TCGCGCACCG CCTGTCGACG ATCGAGCGCG CCGACCGGAT CCTTGTGCTC
GAAGGCGGCA AGATCGTCGA AAGCGGCAGC CACCGCGAAT TGCTCGAGCA GGGCGGGCTC
TACGCGCACC TGCACCGCAT CCAGTTCCAG CAGGACGCGG GATGA
|
|---|
| Protein sequence | MRRLWPYVKP LVWVLVAGVL AMAAVAATEA GIPALLKPLL DHGFGSKGDM TTKLYVPAAV
VGLALARAIA QYASGYLLQY VSNRILLDLR IQMFERMIHT GVSFFQRETA STVINAVVFE
VNQVLSVLMG VTITLVRDSL TVVFLLGYLF YLNWRLTLIV AILLPCIGWL VGKINRRLRR
LNREHQTLTN QLAYIVEETV GGYKVVKVHN GEPYEIGRFN ELSRKLRGYS MRMTVSGGLA
QPLTQFLASI ALAVVLTIAV VQSANDQTTV GGFVAFVTAM LLIISPLKHL MDVNQPLQRG
MTAAELIFGL IDEPREPEGG GKPLARASGA IEFSHVSFSY GMSRDGRQTL DDVSFTVAPG
EMVALAGPSG SGKTTLVNLL PRFFDPSSGS VRVDGVALPE YSLRDLRNQI AMVSQDVVLF
NDTIAANVAY GQAPERDRVE AALRAANLWE TVTAMPDGID TLVGDNGMRL SGGQRQRLAI
ARAIYKDAPI LILDEATSAL DSESERHVQA ALETLMKGRT TLVIAHRLST IERADRILVL
EGGKIVESGS HRELLEQGGL YAHLHRIQFQ QDAG
|
|---|
| |