| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BURPS1106A_0542 |
|---|
| Symbol | |
|---|
| ID | 4901449 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia pseudomallei 1106a |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009076 |
|---|
| Strand | - |
|---|
| Start bp | 508574 |
|---|
| End bp | 509770 |
|---|
| Gene Length | 1197 bp |
|---|
| Protein Length | 398 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 640133772 |
|---|
| Product | pyridoxal-dependent decarboxylase family protein |
|---|
| Protein accession | YP_001064825 |
|---|
| Protein GI | 126453032 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0019] Diaminopimelate decarboxylase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAACACTG ACACGATCGG ATCCGCGCCG CACGCCGCGG CCGACGCCGG GAACGCCGAA
TGGCTCGACG GGCTCGACAC GCCCTGCTAC GTGTTCGACC CGCAATGCGT GCTCGCCAGC
TACGCCGCGC TGCGCGCGGC GCTCGGCACG CGCCTCGTCG TGTCGCTGAA GGCGAACTCG
CATGCGGACC TGTTCCTGCG CTGCGCGCAC GCGTTCGAAG ACGGCATCGA GCTCGCGAGC
CAGGGCGAGC TCGACACCGT CGTCGGGCGC GGCAAGCACG TGAAGTACCT GAACAACCCC
GCGATGGGCG ATGCGCTGAT GCGCGCGGGC ATCGCGTCGC GCTGCCATTT CATCCTCGAC
GGGCCGGACA TGGTGCGCCG CTTCATCGCG CTCGCGTCCG GCAAGGAGAC CGAGGACGTG
ATGCTGCGCA TCAACGCGGG CGCGCTGCTC GGCGCGCACG CGCCGAAATC GCTGCGCGAT
CATTTCGGCA TGACGCCCGC GGAGGCACTC GGCATGGCGA ACCTGCTCAC GCAGGCGGGC
CGCCGCGTGG CGGGGCTGCA CGCGTTCGTC GGCTCGGGCA ATTTTCGCGC CGGCCCGACG
AAGGGCGGCG ACGCAGATTC GGCCGATCTC GCCTGGGCGC TCGCGCAGCT CGCCGAGCAG
ATCGAGGCGC TCGTGCGCGC GCCCGTCACG CATCTGAACC TGGGCGGCGG GTTTTCGGAA
AAAGGCCACG ACGACGCCAC CTTCGAGCGC TACCGCGCGC GCATTGCCCC GCTCGCGAAG
CGCTACACGC TCGTGCACGA AGCGGGCCGC GCGATCTTCG CGAACGCGGG CGTGTTCGTC
ACGCGCGTGC GCGCGGTCAA GGTCTGGGAC GACCGCGTGA TCGCCGTGTG CGACGGCGGC
ATGAGCCACA ACTTCCTGCT CGCGAAAACG GAAGCCGTCC TGAAGACCTG GGCGGCGCCG
ACGCTCGTGC CGGCCGGCGC CGCCGACGCG CATCGCGCGC CGAACGCGCG GCCGATCACG
TTCGTCGGCA ACACCTGCAA CCGCGCCGAC GTGATCGGCC GGCTCGAGCG TCATCCGCGG
CTGCCGCAGC CGGGCGACTT CGTCGTGTTC TCGCAATGCG GCGCCTATCA CCACTCGTAC
ACCGTGAGCG GCTTCCTGTC GCACAAGCCG GCTCAGGTCT ACATCCGTCA GGCATGA
|
|---|
| Protein sequence | MNTDTIGSAP HAAADAGNAE WLDGLDTPCY VFDPQCVLAS YAALRAALGT RLVVSLKANS
HADLFLRCAH AFEDGIELAS QGELDTVVGR GKHVKYLNNP AMGDALMRAG IASRCHFILD
GPDMVRRFIA LASGKETEDV MLRINAGALL GAHAPKSLRD HFGMTPAEAL GMANLLTQAG
RRVAGLHAFV GSGNFRAGPT KGGDADSADL AWALAQLAEQ IEALVRAPVT HLNLGGGFSE
KGHDDATFER YRARIAPLAK RYTLVHEAGR AIFANAGVFV TRVRAVKVWD DRVIAVCDGG
MSHNFLLAKT EAVLKTWAAP TLVPAGAADA HRAPNARPIT FVGNTCNRAD VIGRLERHPR
LPQPGDFVVF SQCGAYHHSY TVSGFLSHKP AQVYIRQA
|
|---|
| |