Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | BTH_II0836 |
Symbol | spaP |
ID | 3846397 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia thailandensis E264 |
Kingdom | Bacteria |
Replicon accession | NC_007650 |
Strand | + |
Start bp | 977675 |
End bp | 978367 |
Gene Length | 693 bp |
Protein Length | 230 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 637838139 |
Product | surface presentation of antigens protein SpaP |
Protein accession | YP_439033 |
Protein GI | 83718329 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG4790] Type III secretory pathway, component EscR |
TIGRFAM ID | [TIGR01102] type III secretion apparatus protein, YscR/HrcR family |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 0.108898 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCGAATA ACGAAATCGC GCTGATCGTC CTGCTGACGG CGGCGACGCT CGTGCCGTTC GTCGTCGCGG CGGGCTCGTG CTTCATCAAG TTCTCGATCG TGCTCGTGCT CGTGCGCAAC GCGCTCGGCA TCCAGCAGGT GCCGTCGAAT CTCGCGCTCA ACAGCATCGC GCTCATCATG TCGCTGTTCG TGATGATGCC CGTCGCGCAG AGTGCGTACC GGTATCTGCA GCACCATCCG CTCGACGTGA TGAACGGCAG TTCGGTCAAC GATTTCATCG ACGGCGGCCT CGGCGATTAC AAGCGCTATC TGACGCGTTA CTCCGATCCG GAGCTCGTGC GCTTCTTCGA GCGCGCGCAA GCCGCGCGCC TGAAGCGCGA CGACGCCGAC GCGGCCGACG CCGACGCGGA CGCCGGCGAC GAGCCGGACG GCCTCGACAA CTCGCTGTTC TCGCTGCTGC CCGCGTACGC GCTCACCGAG ATCAAGAGCG CGTTCAAGAT CGGCTTCTAC CTGTATCTGC CGTTTCTCGT CGTCGACATG GTGGTGTCGA GCGTGCTGCT CGCGCTCGGG ATGATGATGA TGAGCCCGGT GACGATCTCG GTGCCGATCA AGCTGATCCT GTTCGTCGCG ATGGACGGCT GGACGCTGAT CTGCAAGGGC TTGATCGAGC AGTACCTGAA TCTGATGAAA TAG
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Protein sequence | MANNEIALIV LLTAATLVPF VVAAGSCFIK FSIVLVLVRN ALGIQQVPSN LALNSIALIM SLFVMMPVAQ SAYRYLQHHP LDVMNGSSVN DFIDGGLGDY KRYLTRYSDP ELVRFFERAQ AARLKRDDAD AADADADAGD EPDGLDNSLF SLLPAYALTE IKSAFKIGFY LYLPFLVVDM VVSSVLLALG MMMMSPVTIS VPIKLILFVA MDGWTLICKG LIEQYLNLMK
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