| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BTH_I3075 |
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| Symbol | rpoC |
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| ID | 3848268 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia thailandensis E264 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007651 |
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| Strand | - |
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| Start bp | 3508897 |
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| End bp | 3513135 |
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| Gene Length | 4239 bp |
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| Protein Length | 1412 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 637842741 |
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| Product | DNA-directed RNA polymerase subunit beta' |
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| Protein accession | YP_443579 |
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| Protein GI | 83719751 |
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| COG category | [K] Transcription |
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| COG ID | [COG0086] DNA-directed RNA polymerase, beta' subunit/160 kD subunit |
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| TIGRFAM ID | [TIGR02386] DNA-directed RNA polymerase, beta' subunit, predominant form |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAGCTT TGCTCGATCT ATTCAAGCAA GTCCAACAAG AAGAAATTTT TGACGCGATC
AAGATCGGTC TGGCCTCGCC GGACAAGATC CGCTCGTGGT CGTTCGGCGA AGTGAAGAAG
CCGGAGACGA TCAACTACCG CACGTTCAAG CCCGAGCGCG ACGGTCTGTT CTGCGCGAAG
ATCTTCGGCC CGATCAAGGA CTACGAGTGC TTGTGCGGCA AGTACAAGCG CCTGAAGCAC
CGCGGCGTGA TCTGCGAGAA GTGCGGCGTC GAAGTGACGC TCGCGAAGGT GCGTCGTGAG
CGGATGGGCC ACATCGAGCT CGCGTCGCCG GTCGCGCACA TCTGGTTCCT GAAGTCGCTG
CCGTCGCGTC TGGGCATGGT GCTCGACATG ACGCTGCGCG ACATCGAGCG CGTGCTGTAC
TTCGAAGCGT ACGTGGTGAT CGATCCGGGC ATGACGCCGC TGAAGGCGCG TCAGATCATG
ACCGAAGAGG ATTACTACAA CAAGGTCGAG GAATACGGCG ACGAATTCCG CGCCGAGATG
GGCGCGGAAG GCGTGCGCGA GCTGCTGCGC TCGATCAACA TCGACGAGCA GGTCGAGACG
CTGCGCACCG AGCTCAAGAA CACCGGCTCG GAAGCGAAGA TCAAGAAGTA CGCGAAGCGC
CTGAAGGTGC TCGAGGCGTT CCAGCGCTCG GGCATCAAGC CCGACTGGAT GATCCTCGAA
GTGCTGCCGG TGCTGCCGCC GGAACTGCGT CCGCTCGTGC CGCTCGACGG CGGCCGTTTC
GCGACGTCGG ATCTGAACGA CCTGTACCGC CGCGTGATCA ACCGTAACAA CCGGTTGAAG
CGTCTGCTCG AGCTGAAGGC GCCGGAGATC ATCGTGCGCA ACGAAAAGCG GATGCTGCAG
GAAGCCGTCG ACTCGCTGCT CGACAACGGC CGCCGCGGCA AGGCGATGAC GGGGGCGAAC
AAGCGTCCGC TGAAGTCGCT CGCCGACATG ATCAAGGGTA AGGGCGGCCG CTTCCGTCAG
AACCTGCTCG GCAAGCGCGT CGACTACTCG GGCCGTTCGG TCATCGTGGT CGGCCCGACG
CTGAAGCTGC ACCAGTGTGG CCTGCCGAAG CTGATGGCGC TCGAGCTGTT CAAGCCGTTC
ATCTTCAACA AGCTGGAAGT GATGGGCGTC GCGACGACCA TCAAGGCGGC GAAGAAGGAA
GTCGAGAACC AGACGCCGGT GGTGTGGGAC ATCCTCGAAG AGGTGATCCG CGAGCACCCG
GTGATGCTCA ACCGTGCGCC GACGCTGCAC CGTCTCGGCA TCCAGGCGTT CGAGCCCGTG
CTGATCGAAG GCAAGGCGAT CCAGCTGCAC CCGCTCGTCT GCGCGGCGTT CAACGCCGAC
TTCGACGGTG ACCAGATGGC CGTTCACGTG CCGCTGTCGC TCGAAGCGCA GATGGAAGCG
CGCACGCTGA TGCTCGCGTC GAACAACGTG CTGTTCCCGG CGAACGGCGA TCCGTCGATC
GTGCCGTCGC AGGATATCGT GCTGGGTCTG TACTACGCGA CCCGCGAGGC GATCAACGGC
AAGGGCGAAG GTCTTTCGTT CACCGGCGTG TCGGAAGTGA TCCGCGCGTA CGAGAACAAG
GAAGTCGAGC TCGCGTCGCG CGTGAACGTG CGGATCACCG AAATGGTCCG CAACGAGGAT
ACGTCCGAAG GCGCGCCGCA GTTCGTGCCG AAGATCTCGC TGTACGCGAC GACCGTCGGC
CGCGCGATCC TGTCGGAAAT CCTGCCGCCG GGCCTGCCGT TCTCGGTGCT GAACAAGCCG
CTGAAGAAGA AGGAAATCTC GCGCCTGATC AACACCGCGT TCCGCAAGTG CGGCCTGCGC
GCGACCGTCG TGTTCGCCGA CCAGCTGATG CAGTCGGGCT TCCGTCTCGC GACGCGCGCC
GGCATCTCGA TCTGCGTCGA CGACATGCTT GTGCCGACGC AGAAGGAACA GATCGTCGGC
GACGCCGCGA AGAAGGTGAA GGAGTACGAC CGCCAGTACA TGTCGGGTCT CGTCACCGCG
CAGGAACGCT ACAACAACGT GGTCGACATC TGGTCGGCGA CGTCGGAAGC GGTCGGCAAG
GCGATGATGG AGCAGTTGTC GACGGAGCCG GTGGTCGATC GCGACGGCAA CGAGACGCGC
CAGGAATCGT TCAACTCGAT CTACATGATG GCCGACTCGG GCGCCCGGGG TTCGGCGGTG
CAGATTCGTC AGCTGGCCGG CATGCGCGGC CTGATGGCGA AGCCGGACGG CTCGATTATC
GAGACGCCGA TTACCGCGAA CTTCCGCGAA GGCCTGAACG TGCTGCAGTA CTTCATCTCG
ACCCACGGTG CACGTAAGGG TCTGGCTGAT ACGGCACTGA AGACTGCGAA CTCGGGTTAT
CTGACGCGCC GTCTCGTCGA CGTGACGCAG GATCTCGTCG TCGTGGAAGA CGATTGCGGC
ACGTCCAACG GCGTCGCGAT GAAGGCGCTC GTGGAAGGCG GTGAAGTCGT CGAAGCGCTG
CGCGACCGTA TTCTCGGCCG CGTCGCGGCG TCGGACGTCG TCAATCCGGA AACGCAGGAA
ACCCTGTACG AAGCAGGCAC GCTGCTCGAC GAAACCGCGG TGGAAGACAT CGAACGCCTC
GGCATCGACG AAGTGCGCGT GCGCACGGCG CTCACCTGCG AAACGCGCTA TGGCTTGTGC
GCGTCGTGCT ACGGCCGCGA TCTCGGCCGC GGCTCGCTCG TGAACGTCGG CGAAGCGGTC
GGCGTGATCG CGGCGCAGTC GATCGGCGAA CCGGGCACGC AGCTCACGAT GCGTACGTTC
CACATCGGTG GCGCGGCATC GCGCGCGGCA GTGGCGTCGT CGGTCGAAGC GAAGAGCAAC
GGTACGGTGC GCTTCACGGC GACGATGCGT TACGTCACGA ACGCGAAGGG CGAGCAGATC
GTCATCTCGC GCTCGGGCGA GGCGATGATC ACGGACGATA TCGGCCGTGA GCGCGAACGC
CACAAGGTGC CGTACGGCGC GACGCTGCTG CAGCTCGACG GTGCGCAGAT CAAGGCGGGT
ACGCAGTTGG CTACGTGGGA TCCGCTGACG CGTCCGATCA TCACCGAGTA CGGCGGTACG
GTGAAGTTCG AGAACGTCGA GGAAGGCGTG ACGGTCGCCA AGCAGATCGA TGACGTGACG
GGCCTTTCGA CCCTCGTCGT GATCGACGTG AAGCGTCGCG GTTCGCAGGC GTCGAAGAGC
GTGCGGCCGC AGGTGAAGCT GCTCGACGCG AACGGCGAGG AAGTGAAGAT CCCCGGCACG
GAGCACGCGG TGCAGATCGG CTTCCAGGTC GGCGCGCTGA TCACCGTGAA GGACGGTCAG
CAGGTGCAGG TGGGTGAAGT GCTCGCACGT ATCCCGACCG AAGCGCAGAA GACGCGTGAC
ATTACCGGCG GTCTGCCGCG CGTGGCCGAG CTGTTCGAAG CGCGTTCGCC GAAGGATGCG
GGCATTCTCG CGGAAGTCAC CGGCACGACG TCGTTCGGCA AGGACACGAA GGGCAAGCAG
CGTCTCGTCA TCACGGATCT CGAGGGCAAC CAGCACGAGT TCCTGATCGC GAAGGAAAAG
CAGGTGCTGG TCCACGATGC TCAGGTCGTC AACAAGGGCG AAATGATCGT GGACGGCCCG
GCCGATCCGC ACGACATCCT GCGTCTGCAG GGTATCGAGG CGCTGTCGCG CTACATCGTC
GACGAAGTGC AGGACGTGTA CCGTCTGCAG GGCGTGAAGA TCAACGACAA GCACATCGAA
GTGATCGTGC GTCAGATGCT GCGCCGCGTG CAGATCGTCG ACAACGGCGA TACGCGCTTC
ATTCCGGGCG AGCAGGTCGA GCGCTCGGAC ATGCTGGACG AGAACGACCG CATGATCGCG
GAAGGCAAGC GCCCGGCGAC GTACGAGAAC ATCCTGCTGG GTATCACGAA GGCGTCGCTG
TCGACCGATT CGTTCATCTC CGCGGCATCG TTCCAGGAAA CGACCCGCGT GCTGACCGAG
GCTGCGATCA TGGGCAAGCG CGACGATCTG CGTGGCCTGA AGGAAAACGT GATCGTCGGC
CGTCTGATCC CGGCCGGTAC GGGTCTCGCG TTCCACAAGG CGCGCAAGGC GAAGGAGCAA
TCCGATCGCG AGCGTTTCGA CCAGATCGCA GCGGAAGAAG CGTTCGAGTT CGGCACGCCG
AGCACGCCCG CCGAAGAGCC GCAGCACCCG GCGGAGTAA
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| Protein sequence | MKALLDLFKQ VQQEEIFDAI KIGLASPDKI RSWSFGEVKK PETINYRTFK PERDGLFCAK
IFGPIKDYEC LCGKYKRLKH RGVICEKCGV EVTLAKVRRE RMGHIELASP VAHIWFLKSL
PSRLGMVLDM TLRDIERVLY FEAYVVIDPG MTPLKARQIM TEEDYYNKVE EYGDEFRAEM
GAEGVRELLR SINIDEQVET LRTELKNTGS EAKIKKYAKR LKVLEAFQRS GIKPDWMILE
VLPVLPPELR PLVPLDGGRF ATSDLNDLYR RVINRNNRLK RLLELKAPEI IVRNEKRMLQ
EAVDSLLDNG RRGKAMTGAN KRPLKSLADM IKGKGGRFRQ NLLGKRVDYS GRSVIVVGPT
LKLHQCGLPK LMALELFKPF IFNKLEVMGV ATTIKAAKKE VENQTPVVWD ILEEVIREHP
VMLNRAPTLH RLGIQAFEPV LIEGKAIQLH PLVCAAFNAD FDGDQMAVHV PLSLEAQMEA
RTLMLASNNV LFPANGDPSI VPSQDIVLGL YYATREAING KGEGLSFTGV SEVIRAYENK
EVELASRVNV RITEMVRNED TSEGAPQFVP KISLYATTVG RAILSEILPP GLPFSVLNKP
LKKKEISRLI NTAFRKCGLR ATVVFADQLM QSGFRLATRA GISICVDDML VPTQKEQIVG
DAAKKVKEYD RQYMSGLVTA QERYNNVVDI WSATSEAVGK AMMEQLSTEP VVDRDGNETR
QESFNSIYMM ADSGARGSAV QIRQLAGMRG LMAKPDGSII ETPITANFRE GLNVLQYFIS
THGARKGLAD TALKTANSGY LTRRLVDVTQ DLVVVEDDCG TSNGVAMKAL VEGGEVVEAL
RDRILGRVAA SDVVNPETQE TLYEAGTLLD ETAVEDIERL GIDEVRVRTA LTCETRYGLC
ASCYGRDLGR GSLVNVGEAV GVIAAQSIGE PGTQLTMRTF HIGGAASRAA VASSVEAKSN
GTVRFTATMR YVTNAKGEQI VISRSGEAMI TDDIGRERER HKVPYGATLL QLDGAQIKAG
TQLATWDPLT RPIITEYGGT VKFENVEEGV TVAKQIDDVT GLSTLVVIDV KRRGSQASKS
VRPQVKLLDA NGEEVKIPGT EHAVQIGFQV GALITVKDGQ QVQVGEVLAR IPTEAQKTRD
ITGGLPRVAE LFEARSPKDA GILAEVTGTT SFGKDTKGKQ RLVITDLEGN QHEFLIAKEK
QVLVHDAQVV NKGEMIVDGP ADPHDILRLQ GIEALSRYIV DEVQDVYRLQ GVKINDKHIE
VIVRQMLRRV QIVDNGDTRF IPGEQVERSD MLDENDRMIA EGKRPATYEN ILLGITKASL
STDSFISAAS FQETTRVLTE AAIMGKRDDL RGLKENVIVG RLIPAGTGLA FHKARKAKEQ
SDRERFDQIA AEEAFEFGTP STPAEEPQHP AE
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