Gene BRA0579 details

Gene Information

• Locus tag: BRA0579
• Symbol: mfd
• ID: 1165018
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Brucella suis 1330
• Kingdom: Bacteria
• Replicon accession: NC_004311
• Strand: -
• Start bp: 557774
• End bp: 561142
• Gene Length: 3369 bp
• Protein Length: 1122 aa
• Translation table: 11
• GC content: 61%
• IMG OID: 637331683
• Product: transcription-repair coupling factor
• Protein accession: NP_699763
• Protein GI: 23500323
• COG category: [K] Transcription; [L] Replication, recombination and repair
• COG ID: [COG1197] Transcription-repair coupling factor (superfamily II helicase)
• TIGRFAM ID: [TIGR00580] transcription-repair coupling factor (mfd)

Plasmid Coverage information

• Num covering plasmid clones: 5
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTATATCG TGCGCGACGG GCAGCGCATT GCCGATCTGG AGCAGGTGTT GGGTTTCGTT 
TCGCCCGATC TGCCGGTGCT GCACCTGCCC GCCTGGGATT GCCTGCCTTA TGACCGCGTG 
TCGCCAGGGG CGGATGCTGC AGCGCGCAGA CTTGCGGCGC TCAGCGCGCT TTGCGCACTG 
AAGAAAGCAC CGCATCCAGC CGTCATTCTC ACCACGGCCA ATGCCGTGCT GCAAAAATTG 
CCGCCGCAGG CCGCACTTGG CGAACAGGTG ATCTCAGCGC GCCCCGGCAA CCAGCTCGAC 
ATGAACGATC TTGCCGCACG GCTGGAGCGC AACGGCTTTG AGCGTGTCTC TACCGTGCGC 
GACATCGGCG AATATGCGGT ACGCGGCGGC ATTCTCGATC TTTATGCGCC GGGAGCGGAA 
GAACCGCTGC GGCTTGATTT TTTCGGCGAT ACGCTGGAAA CGATCCGTGC CTTCGATCCC 
GCCTCCCAGC GCACCACCGG CACCCGAAAG GAATTCGTGC TTCAGCCGAT GAGCGAAATC 
ACGCTCTCGT CCGACATGAT AAGCCGGTTT CGCAAGAATT ATGTGGCCAC GTTCGGCGCG 
CCGCAGCGTG ACGATGCGCT TTATCAGGCC ATCAGCGAAG GCCGCCGTTT TGCTGGCATG 
GAACATTGGC TGCCGCTTTT CTATGACAAT CTAGAGACAG TTTTCGACCA TGCCGGGCCA 
ATGCCGGTCG TGTTCGACCA TCTGGTGCAT GAGGCGCTGA CCGAGCGCCA CACCATGGTT 
GTGGACCATT ACGAAGCGCG ACTGCGGCAG GCGGAGGGCA AAGAGGCGGG CAGCGATGCC 
GTGCCTTACA AGCCGGTAAA GCCGGAAATG CTCTATCTTA CGCCGGGCCA GGTTGAAGAA 
GCCGCCGAGG CCGCTGGCCT GCGTATTGAC CTTACGCCAT TCGGCGCGCC GGAGGTTTCC 
GGCCGGACCA TTATTCATGC CGATGTGCAC AAGGGCCGCA GCTTTGCCGA GGAGCGCGCC 
GCAACCGACG TGAACCTGTT TGAAGCCGTG GTGAAACATA TTGCAGACCT GCGCGCCTCC 
GGCAAAAAGG TTCTGGTTGC CGCCTGGACC GAAGGTTCGC TCGACCGGCT CTGTCAGGTT 
CTGGACGAAC ACGGGCTTGA AAAAATAGAG ACCGTCGATA GGCTTTCCAC CGTCAAGGCC 
CTGTCGCGCG ACAAGGTGAC GGCGGCGGTG CTGGCGGTCG AAAGCGGCTT CGATGCGGGC 
GATCTGGTGG TCGTGGCGGA GCAGGATATT CTGGGCGACA GGCTCATCCG CCGCTCCAGG 
CGCCGCAAGC GCGATCAGGA TTTCATCTCG GAAGTCGCCT CGCTGACGGC TGGCGATATC 
GTCGTCCATG TCGATCACGG CATTGGGCGC TTTATCGGCC TCAAGACGAT TACTGCGGCA 
GGCGCCCCGC ATGACTGCCT TGAAATCCAT TATGCGGGCG ATGACCGCCT GTTTCTGCCG 
GTTGAGAATA TCGAGCTTCT GTCGCGCTAT GGCTTGGAAG GGTCCGATGC GGTTCTCGAC 
AAGCTGGGCG GTGGCGCATG GCAGGCGCGC AAGGCAAAAC TCAAGAAACG GCTTCTGGAA 
ATTGCCGGCC ATCTGATCCA GATTGCCGCC GAACGCCAGA TGCGCGGTGC GCCTGTGATG 
ACGCCGCCGG ACGGTCTTTA TGCGGAATTT GCCGCGCGCT TTCCCTATGA TGAGACTGAC 
GACCAGTTGA CGGCAATCGA GGCCGTGGCG GATGATCTTG CGCAAGGCAA GCCGATGGAT 
CGCCTCATCT GCGGCGATGT CGGGTTCGGC AAGACGGAAG TGGCGCTGCG CGCCGCCTTC 
ATCGCCGCGA TGAGCGGCGT TCAGGTGGCA GTGGTCGTGC CGACCACGCT TCTTTCGCGC 
CAGCATTTCA AGACCTTCTC CAACCGCTTT CACGGCCTGC CGATCAATGT GGCCCACGCC 
TCACGCCTCG TCGGCGCGAA GGAGCTGGCC GCCACCAAAA AGGGGCTGGA AGAGGGAACG 
GTCGATATTG TCGTCGGCAC ACACGCGCTT TTGGGCAGCT CCATCAAGTT CAAGAATCTC 
GGCCTTCTCA TTATCGATGA GGAGCAGCAT TTCGGTGTGA AGCACAAGGA ACGGCTGAAG 
GAACTGAAAT CCGACGTCCA TGTGCTGACC CTTTCGGCCA CGCCGATCCC GCGCACCCTG 
CAACTTGCGC TGACCGGCGT GCGCGAACTT TCGCTCATCA CCACGCCGCC GGTGGACCGC 
ATGGCGGTGC GCACCTTCGT CTCGCCATTC GATCCGCTCG TGATCCGCGA AACCCTTTTG 
CGTGAACGCT ATCGCGGCGG CCAGAGCTTC TATGTCGTCC CACGCATAGC CGACCTCACG 
GATATTGAAG AATTCCTGAA GGAGCATGTG CCGGAACTGA AAGTGGCCGT GGCCCATGGC 
CAGATGGCGC CGGGTGTGCT GGATGACATC ATGAATGCCT TCTATGACGG GCAGTATGAT 
GTGCTTCTTT CCACAACCAT CGTGGAATCG GGCCTCGATA TTCCAACCGC CAACACCATG 
ATCGTGCATC GTGCCGATAT GTTCGGGCTG GCGCAACTCT ATCAGTTGCG CGGCCGCGTG 
GGCCGCTCCA AGCAGCGCGC TTTCGCGCTG TTCACGCTCC CGGCGGGCAA GATGCTGACG 
CAGATGGCCG AACGCCGTCT GAAAGTGCTG CAATCGCTCG ACACGCTTGG CGCGGGCTTC 
CAGCTTGCAA GCCACGACAT GGATATTCGC GGCGCAGGCA ATCTGCTGGG CGAGGAACAG 
TCGGGCCACA TCAAGGAAGT GGGCTTCGAG CTTTACCAGC AAATGCTTGA AGAAGCGGTT 
GCGACGCTGA AGGGCTCCGG CGAAGTGGAA GACAGCCAGT GGTCGCCGCA GATCGCCATT 
GGTACGGCGG TCATGATCCC GGAAGCCTAT GTGCCCGACC TGCAATTGCG CCTTGGCCTT 
TATCGCCGTC TGGCCGATCT GGAAGAGCCG CAGGATATCG ATGCCTTTGG TGCGGAACTC 
ATCGACCGTT TCGGCCCGAT GCCCGACGAA GTGCAGCATC TTCTCAAGAT CGTCTATATC 
AAGGCGCTCT GCCGCCGCGC CAATGTTGAG AAACTCGATG CCGGGCCGAA GGGCGTGGTT 
ATCCAGTTCC GCCACGCGAC CTTCAACAAT CCGGTCGGTC TGGTAAAAAT GATCGGCGAG 
CAGGGGTCCA TGGCGAAGAT CAGGCCGGAC CAGAGCATCG TCTTCATCCG CGATTGGCCG 
ACACCGGAAA AGCGCCTCAA CGGCTCCGCC GTCATCATGA CACAGCTTGC AAAGATTGCG 
GCGGCCTGA 

 

Protein sequence

MYIVRDGQRI ADLEQVLGFV SPDLPVLHLP AWDCLPYDRV SPGADAAARR LAALSALCAL 
KKAPHPAVIL TTANAVLQKL PPQAALGEQV ISARPGNQLD MNDLAARLER NGFERVSTVR 
DIGEYAVRGG ILDLYAPGAE EPLRLDFFGD TLETIRAFDP ASQRTTGTRK EFVLQPMSEI 
TLSSDMISRF RKNYVATFGA PQRDDALYQA ISEGRRFAGM EHWLPLFYDN LETVFDHAGP 
MPVVFDHLVH EALTERHTMV VDHYEARLRQ AEGKEAGSDA VPYKPVKPEM LYLTPGQVEE 
AAEAAGLRID LTPFGAPEVS GRTIIHADVH KGRSFAEERA ATDVNLFEAV VKHIADLRAS 
GKKVLVAAWT EGSLDRLCQV LDEHGLEKIE TVDRLSTVKA LSRDKVTAAV LAVESGFDAG 
DLVVVAEQDI LGDRLIRRSR RRKRDQDFIS EVASLTAGDI VVHVDHGIGR FIGLKTITAA 
GAPHDCLEIH YAGDDRLFLP VENIELLSRY GLEGSDAVLD KLGGGAWQAR KAKLKKRLLE 
IAGHLIQIAA ERQMRGAPVM TPPDGLYAEF AARFPYDETD DQLTAIEAVA DDLAQGKPMD 
RLICGDVGFG KTEVALRAAF IAAMSGVQVA VVVPTTLLSR QHFKTFSNRF HGLPINVAHA 
SRLVGAKELA ATKKGLEEGT VDIVVGTHAL LGSSIKFKNL GLLIIDEEQH FGVKHKERLK 
ELKSDVHVLT LSATPIPRTL QLALTGVREL SLITTPPVDR MAVRTFVSPF DPLVIRETLL 
RERYRGGQSF YVVPRIADLT DIEEFLKEHV PELKVAVAHG QMAPGVLDDI MNAFYDGQYD 
VLLSTTIVES GLDIPTANTM IVHRADMFGL AQLYQLRGRV GRSKQRAFAL FTLPAGKMLT 
QMAERRLKVL QSLDTLGAGF QLASHDMDIR GAGNLLGEEQ SGHIKEVGFE LYQQMLEEAV 
ATLKGSGEVE DSQWSPQIAI GTAVMIPEAY VPDLQLRLGL YRRLADLEEP QDIDAFGAEL 
IDRFGPMPDE VQHLLKIVYI KALCRRANVE KLDAGPKGVV IQFRHATFNN PVGLVKMIGE 
QGSMAKIRPD QSIVFIRDWP TPEKRLNGSA VIMTQLAKIA AA