Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | BMA10247_A0635 |
Symbol | sctV |
ID | 4889941 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia mallei NCTC 10247 |
Kingdom | Bacteria |
Replicon accession | NC_009079 |
Strand | + |
Start bp | 588192 |
End bp | 590264 |
Gene Length | 2073 bp |
Protein Length | 690 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 640146911 |
Product | type III secretion inner membrane protein SctV |
Protein accession | YP_001077836 |
Protein GI | 126446505 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG4789] Type III secretory pathway, component EscV |
TIGRFAM ID | [TIGR01399] type III secretion protein, HrcV family |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACGCTGA AATCCCTCAA ACTTCCCGCC GGCGGCGAGG TCGGCATCAC GGTGCTCGTC GTCGCGATCG TCTCGCTGAT GATCCTGCCG CTGCCGCCCG AGGTGATCGA CGTGCTGCTC GGCGTGAACA TCGCGATCAG CGTCACGCTG CTGATGGTGA CGATGTACGT CGGCAGCATC GTGTCGCTGT CGGTGTTCCC GTCGATCCTG CTGTTCACGA CGCTGTACCG GCTGTCGCTG AACATCGCGT CGACGAAATC GATCCTGCTG CACGCGAACG CGGGCGACAT CATCGAGAGC TTCGGCGAGC TCGTCGTCGG CGGCAATCTC GTCGTCGGCC TCGTCGTGTT CCTGATCATC ACGATCGTGC AGTTCATCGT GATCGCGAAG GGCTCGGAGC GCGTGGCCGA AGTCGGCGCG CGCTTCACGC TCGACGCGAT GCCGGGCAAG CAGATGAGCA TCGACGCGGA TCTGCGCGCG AACATCCTGA CGCCGGACGA GGCGCGCCGC AAGCGCGCGA CGCTCGCCAA GGAAAGCCAG TTGCACGGCG GGATGGACGG CGCGATGAAG TTCGTCAAGG GCGACGCGAT CGCCGGGCTC ATCATCACGC TCGTGAACAT CGTCGCGGGC ATCGCGATCG GCGTGATGTA CCACGGGATG ACGGCGGGGG ACGCCGCGAA CCGCTTCTCG ATCCTGTCGG TCGGCGATGC GATGGTGTCG CAGATTCCGT CGCTGCTGAT CTCGGTCGCG GCCGGCGTGA TGATCACGCG CGTCGCCGAC GATCACGACG ACGGCGACGG CACGTCGCTC GGCTCGGAGA TCGCCAGGCA ACTGGGCGGC AGCCATCGCG CGCTGTATTT CGCCGCGGTG CTGCTGATCG GCTTCGCGGC GGTGCCCGGC TTTCCGGCCG CGCTCTTCGT GCTGCTGTCG GGCATGCTCG CGTTCGCCGG CTACCGGCTG CAAAAGGGCG CGCGGCGCAC GACCGCGCGC GGCGAGCCGG TGATCGCGCT GCAGCGCGCG GGCGCGAAGA GCAGCACGCC GTCGATTCTG CCGCGCGCGC CGCTATTCAC CTGCGCGATC GGCGTGCGCG TCGCGCCCGA TCTCGTCGCC CGGCTCGCGC CCGCCGCGCT CGACCGCGCG TTCGACGAGG AGCGCGCGAA GCTGCAGGAA GAACAGGGGC TGCCGTTTCC CGGCATCACG CTGTGGACGA GCGACGCGCT GCCCGCGTCG ACGTGCGAGA TCCTGATGCG CGACGTGCCG CAGGCGCGGC TCGAGTTGCC GGCCGACCAG ACGATGCTGC CCGACGCGGC GTCGGACCCG GCGCTCGCCG GCCGCTGCAC GAAGCGCGGG CCCGCGGGCG GCCTCGCCGA GAGCTACTGG ATCGACGACA AGGCGGTGCC GGCCGGCGCG CGCGCGTGGC GCGCCGAGCA GGTGGTCGCG CACGAGACGA TCGCGCTGCT CAGGCGCAAT GCGCACCTGT TCCTGGGTAT TCAGGAAGCC CAATGGATAC TCGACCAGCT CGGCGTCGAT TATCCGGGGC TCGTCGCCGA AGTGCAGAAG ACGCTGCCGA CGCAGCGCAT CGCCGACGTG CTGCGCCGCC TGCTCGAGGA ACACATTCCG ATCCGCAACG CGCGCGACAT CATGGAGAGC CTCGTCGCAT GGGGGCCGAA GGAGAAGGAC ATGCTGATGC TCGCCGAGTA CGTGCGCGGC GACCTGTCGC GCTATCTCGC CTATCGCGCG GCGCGCGGCG CGCGGCAGTT GCCCGCCGTG CTGCTCGACA TGGCGGTCGA GCAGCACATC CGGCAGTCGA TCAAGCAGAC GCCCGCGGGC AACTTTCTCG CGCTGCCGCC CGAGCAGGTG CGCTATCTCG TCGACAGCAT CGCGTCGTTC GTCGGCGAAG CGCCGCGCGA CGATGTCGCG CTCGTCACGT CGATGGACGT GCGCCGCTAC ACGCGGCGCA TGATCGAGGC GCGGCTCGAC TGGCTGCCCG TCTATTCGTA TCAGGAGCTC GGCGACCAGG TGCAGTTGCA GCCGGTCGGC CGCGTGACGA TGCCGACGGC GGCCCACGCA TGA
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Protein sequence | MTLKSLKLPA GGEVGITVLV VAIVSLMILP LPPEVIDVLL GVNIAISVTL LMVTMYVGSI VSLSVFPSIL LFTTLYRLSL NIASTKSILL HANAGDIIES FGELVVGGNL VVGLVVFLII TIVQFIVIAK GSERVAEVGA RFTLDAMPGK QMSIDADLRA NILTPDEARR KRATLAKESQ LHGGMDGAMK FVKGDAIAGL IITLVNIVAG IAIGVMYHGM TAGDAANRFS ILSVGDAMVS QIPSLLISVA AGVMITRVAD DHDDGDGTSL GSEIARQLGG SHRALYFAAV LLIGFAAVPG FPAALFVLLS GMLAFAGYRL QKGARRTTAR GEPVIALQRA GAKSSTPSIL PRAPLFTCAI GVRVAPDLVA RLAPAALDRA FDEERAKLQE EQGLPFPGIT LWTSDALPAS TCEILMRDVP QARLELPADQ TMLPDAASDP ALAGRCTKRG PAGGLAESYW IDDKAVPAGA RAWRAEQVVA HETIALLRRN AHLFLGIQEA QWILDQLGVD YPGLVAEVQK TLPTQRIADV LRRLLEEHIP IRNARDIMES LVAWGPKEKD MLMLAEYVRG DLSRYLAYRA ARGARQLPAV LLDMAVEQHI RQSIKQTPAG NFLALPPEQV RYLVDSIASF VGEAPRDDVA LVTSMDVRRY TRRMIEARLD WLPVYSYQEL GDQVQLQPVG RVTMPTAAHA
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