| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BLD_1972 |
|---|
| Symbol | |
|---|
| ID | 6364434 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Bifidobacterium longum DJO10A |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010816 |
|---|
| Strand | + |
|---|
| Start bp | 2356085 |
|---|
| End bp | 2357752 |
|---|
| Gene Length | 1668 bp |
|---|
| Protein Length | 555 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 642681181 |
|---|
| Product | putative proteasome component |
|---|
| Protein accession | YP_001955915 |
|---|
| Protein GI | 189440834 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACCGTTA AACGAGTGAT GGGCACCGAA ACCGAATACG CGGTATCCCT GAACACCCCG
GACCGCTACA ATCCGGTGCA ACTGTCCTTC GACGTGGTGA ACGGCGCCGC GGACAGCCAC
AGCAAATCCA TCCGCTGGGA CTACCGGCAG GAGGACCCGG TCAACGACGC GCGCGGCACC
CGACTCGAAC GCGCCGCCGC CCGCCCGGAC ATGCTCACCG ACGCCCCACA ACTCAACATC
ACCAACGTGA TCGCTCCCAA CGGTGGCCGC GTCTACGTGG ACCACGCCCA TCCCGAATAC
TCGGCACCGG AAACCACCGA CCCGTTCGAA GCGGTCCGCT ATGACCGTGC CGGAGACCTC
ATCATGCAGG CCGCCACCGA ACGCGCCCGC ACACAAACCG GCACCCCCAT CGCCCTGCAT
CGCAACAATG TGGACGGCAA GGGCTCCTGC TGGGGCACGC ATGAGAACTA TATGATGGCC
CGCTCAGTGC CATTTGACCT AGTCACGCGC CTGATGACCC TCCACTTCGT CACCCGCCAG
ATCTACGCCG GCTCCGGCCG CGTAGGAATC GGCGAGAACA GCGAAATCCC CGGCTATCAG
CTCAGCCAGC GCGCCGACTA CATCCACGCC AAAGTCGGCC TGCAAACCAC CTTCGAACGC
CCGATTATCA ACACGCGCGA CGAATCCCAC TCCACCGACG AATACCGCCG CCTGCACGTC
ATCGTCGGCG ACGCCAACCG TATGGAGGTA CCGCAGGCCC TGAAACTCGG CACCACAAGC
ATGCTGCTGT GGCTGCTCGA ACACGCGGAC GAAGCCGGAT TCGATCTGAA CGCCTTCCTC
GACGAACTCG AACTGGCCGA CCCGGTCGAA GCCATGCACA CCGTCTCCCA CGACCTGACG
CTGGGCGCAA GCCTGCCGCT GGCCAACGGC GGCGAAACCA ACGCATGGCT TATCCAGCTC
AAACTGCGCC AAGCCGTCTA CCAGGTTGCC GCACTGGTCG AAGGCACCGA CACCGCCGGC
GAGCCCGCCT GGCCGGACAA ATCCACCACA TCCATCATGG CGATGTGGCA GCAGGCGCTC
ATCGACTGCG CCTCCATCCG TCACACCGCC GGCGATGACG AACGTCTGGC CATGACCGGC
GAGGCCAGCC GCATCGAATG GCTGCTCAAA TGGCAGCTGC TCGAAAAACT GCGCCGCAAA
ATCACCGCGG CAGCTGCGCC CAGCGTGGCC AATGGCTGGA ACGACCCGCG ACTGAAGGTC
ATCGACCTGA AATGGGCGGC GCTCGACCCC GCGGACAGCA TCTTCACCAA ACTCGAACCC
CGCACCGAAC GGGTGGTGAG CGCCGCCGAC ATCGCACGCG CCACCACCGA ACCGCCGGAA
GACACCCGCG CCTGGCTCAG GGCAAAACTC GTGGCGCAAT TCGGCGATGA GGTGGCCGCC
GCCAGCTGGT CCCGACTCAC TGTTCGCGAC CCGCGCGCCG CAGACGAGGG CGAGGCTGTC
GAATTCTACG GCAATGCCGG CCATATGGCC GCTACCGACC ATCACCTGTT CTCCCTCGAC
ATCTCCGATC CGCTCGCCTT CACCAAGGCG CGCTGCGAAA CCGAACTCAA TTCGGCCGAA
CACGCCATCG ATCTGCTGAA GTCGCTGGCC ATCAACGCCG AACGATAG
|
|---|
| Protein sequence | MTVKRVMGTE TEYAVSLNTP DRYNPVQLSF DVVNGAADSH SKSIRWDYRQ EDPVNDARGT
RLERAAARPD MLTDAPQLNI TNVIAPNGGR VYVDHAHPEY SAPETTDPFE AVRYDRAGDL
IMQAATERAR TQTGTPIALH RNNVDGKGSC WGTHENYMMA RSVPFDLVTR LMTLHFVTRQ
IYAGSGRVGI GENSEIPGYQ LSQRADYIHA KVGLQTTFER PIINTRDESH STDEYRRLHV
IVGDANRMEV PQALKLGTTS MLLWLLEHAD EAGFDLNAFL DELELADPVE AMHTVSHDLT
LGASLPLANG GETNAWLIQL KLRQAVYQVA ALVEGTDTAG EPAWPDKSTT SIMAMWQQAL
IDCASIRHTA GDDERLAMTG EASRIEWLLK WQLLEKLRRK ITAAAAPSVA NGWNDPRLKV
IDLKWAALDP ADSIFTKLEP RTERVVSAAD IARATTEPPE DTRAWLRAKL VAQFGDEVAA
ASWSRLTVRD PRAADEGEAV EFYGNAGHMA ATDHHLFSLD ISDPLAFTKA RCETELNSAE
HAIDLLKSLA INAER
|
|---|
| |