| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BLD_1967 |
|---|
| Symbol | |
|---|
| ID | 6363716 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Bifidobacterium longum DJO10A |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010816 |
|---|
| Strand | - |
|---|
| Start bp | 2349851 |
|---|
| End bp | 2350555 |
|---|
| Gene Length | 705 bp |
|---|
| Protein Length | 234 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 642681176 |
|---|
| Product | putative HAD superfamily hydrolase |
|---|
| Protein accession | YP_001955910 |
|---|
| Protein GI | 189440829 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1011] Predicted hydrolase (HAD superfamily) |
|---|
| TIGRFAM ID | [TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.0600927 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAGGGTT GGCCCGGAGA GCCGGATATG GATTACGACG TGCTGGTCGC GGACGGCGAA
GCCGCCGCGA ACGCCGGCAA GCCGATCACC GACGTGATCT TCGATTTCGG CAACGTGCTG
ATTTACTGGG ATCCAGCGGC CGTGCTCATC CCCCGCTACA GCCAGAAGAC CATCGACGAA
TTCCTCGACA ACGACATCTC CGGCTTCTAC GATGTCAACG ACCTGATGGA CGGCGGCACC
AGCACCGACG AGGCCATCGC CATCATACGC CGTGACAGGG GCGATAAGTG GGCGGACATC
CTCGACTACT ACATCAAGAA CTTCCGCGAC TCCCTGACCG GCATCGTGCC GGGCGCACGC
GTGCTGGTCA ATGACCTGAA GGCCGCCGGT ATTGGCGTGT GGGGCCTGAG CAACTGGGAA
TCCAGCCTTT TCCACGTGGC CGAGGAACAG TGCGATATTC TGCAGCAGCT TGATGGCAAG
CTCGTCTCCG GTTTCGTCAA GCTGCGCAAG CCGCACAAGG AAATCTACGA GGCCGCGCTC
AATCAGTTCG GTATCAAGGC CGATGGCGCG TTGTTCATCG ACGACAAGGC CATGAACATC
GTCGGTTCGA ATGCGGCCGG CATCCGTGGC GTGCGTTTCC AGGATCCGGT CAAGCTGCGT
GAACTGCTCA TCGCCAATGG CGTGAACATT CCGGCCGTGC AGTGA
|
|---|
| Protein sequence | MKGWPGEPDM DYDVLVADGE AAANAGKPIT DVIFDFGNVL IYWDPAAVLI PRYSQKTIDE
FLDNDISGFY DVNDLMDGGT STDEAIAIIR RDRGDKWADI LDYYIKNFRD SLTGIVPGAR
VLVNDLKAAG IGVWGLSNWE SSLFHVAEEQ CDILQQLDGK LVSGFVKLRK PHKEIYEAAL
NQFGIKADGA LFIDDKAMNI VGSNAAGIRG VRFQDPVKLR ELLIANGVNI PAVQ
|
|---|
| |