Gene BLD_1962 details

Gene Information

• Locus tag: BLD_1962
• Symbol: hsdR
• ID: 6363711
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Bifidobacterium longum DJO10A
• Kingdom: Bacteria
• Replicon accession: NC_010816
• Strand: +
• Start bp: 2341549
• End bp: 2344836
• Gene Length: 3288 bp
• Protein Length: 1095 aa
• Translation table: 11
• GC content: 53%
• IMG OID: 642681171
• Product: type I site-specific restriction-modification system R subunit
• Protein accession: YP_001955905
• Protein GI: 189440824
• COG category: [V] Defense mechanisms
• COG ID: [COG0610] Type I site-specific restriction-modification system, R (restriction) subunit and related helicases
• TIGRFAM ID: [TIGR00348] type I site-specific deoxyribonuclease, HsdR family

Plasmid Coverage information

• Num covering plasmid clones: 3
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGATATTCG ATAGCGAATC GGTGTTCGAG GACAACGTCA TTACCGTGCT TAAGCAGCAT 
GGATGGAAGG ATGGCGTCTT GCGCTATCCA ACCGAACAGG ATCTGCTCGA CAATTGGAAA 
GGCATCCTGT ACCGCAACAA CAACGACATA GACAGGCTTG GCAAATACCC GCTGACAGAC 
GGGGAAATGG CACAGATAAT CGAGCAGATT GAGACCCTAC GAACCCCGCT TGCGCTCAAT 
TCGTTCGTCA ATGGGCGTAC CGTGTCCATC ACGCGTGACA ACAAAGAAGA TGTGGCGCAT 
TTCGGCAAGG AAATCAGCCT CTACATCTAT GACCGCAAGG AAATCGCAGG CGGCAAAAGC 
ACCTATCAGA TTGCTCAGCA ACCGGTCTAT CCCGCCAAGA ACAAGATGTT GAACTCGCGG 
CGCGGCGACC TCGTGCTTCT CATCAATGGC ATGCCATTGA TTCATATCGA GCTTAAGAAA 
AGTGGCATAC CGGTCAGCCA AGCAACCAAT CAGATTGAAA AGTACACACA CGAAGGCGTA 
TTCACCGGCC TGTTCCGACT CGTACAGATT TTTGTAGCCA TGAACCCCGA TGACGCCGTC 
TACTTCGCCA ATCCGGGCGT AGACAAATTC AATCCAAGCT ATTACTTCCA TTGGGCTGAC 
TACAACAACG AGCCTATCTG CGGCGGGCAA AACCCCGGCA AAGACGAATG GAAGCTGTTC 
ATCGGCGGTA CTTCCGGCAC TGCGGGGCTG TTGTCCATTC CCATGGCGCA TCAGCTCATC 
GGCTTCTACA CCATCGCCGA CTCGGCAGAC GGATGCCTCA AGGTGCTGCG CAGCTACCAG 
TACATCGCTG CGAACGCCAT CTCTGACGTG GTGCGCAAAT GCGATTGGGA ACAGCGGCCA 
ACTACTCCGG GACGACCAGG CGGCTATGTA TGGCACACTA CCGGTTCCGG AAAAACCATG 
ACCAGCTTCA AATCGGCACA ACTCATAGCT GATTCGCATG ACGCCGATAA AGTCGTGTTC 
CTTATGGACC GCATCGAGCT AGGCACCCAA TCACTGAAGG AATACCGCAG TTTTGCTGAC 
AGTGAGACGG AAGTACAAGG TACTGAGAAC ACCGGCGTTT TGCGGGACAA ACTCAACAGC 
ACCAATGTCA ACGACACCCT GATCGTCACC TCAATCCAGA AGATGAGCAA CGTGAAAGCA 
GGGGAGCGGG GCGTCACCCA GGCGTGGCTG GATCAGCTGG CTGCACGACG TATCGTTTTT 
ATTGTGGACG AATGCCATCG TTCCACATTC GGCGACATGT TGCAGGACAT CCGTCGTTCC 
TTCCCGAATG CGCTGTTCTT CGGCTTCACC GGCACACCCA TTCTGGATGA GAACCAAAAG 
AAGAATTCCA CCACTGCCAT GGTATTCGGC CGCTGTTTGC ACCGATACAG CATTGCCGAC 
GGCATTCGCG ACCATAATGT GCTCGGGTTC GACCCGTACA TGGTGACCAC GTACAAGGAT 
TCTGAAGTCA GACGTGCCGT GGCTCTCGAC AAGGCGAAGG CGGAGAGTGC GGAAGATGCG 
CTCGCCGACT CGGTCAAGGC CAAAGTATTC CAGCATTACA TGGATAAGTC TGAGGTCCCC 
ATGGGTCCGA TGGTTGATGG TGCCGGGAAC CGCATCAGTG GCATCGAGGA TTTCCTGGGA 
CGAGACCAAT ATGGTATCGA CTCTCCGCAC CCGAGTATGG TGGTCTCGGA CATTCTTGAA 
CAGTTCCCGG TGCTCAGCCA TGCGGGCAAA TTCCATGCGA TGCTCGCTGC CAGTTCCATT 
CCTGAAGCTG TCAACTATTA TCACTTGTTC AAGCAGCAGG CACCCAAGTT GCATGTGACG 
GCGTTGTTCG ATCCCAATAT CGACAACAAC GAAGGAGCGA CAGACAAAGA GGATGCGCTG 
ACCGAAATCA TCACCGATTA CAACGAGGCG TTCGGCAAAG AATTCGTCAT TCCTACATGG 
CCGGCGATGA AGAAGGATAT TTCTTCGCGA CTGTCGCACA AGAGTCCGTA TGGTGGTATA 
GCAACGAACC GCAGCCAGCA GCTTGATTTG CTCATTGTCG TAGACCAGAT GCTCACTGGG 
TTCGACTCGA AATGGGTGAA TACGCTGTAT CTCGATAAGA TTATCGACTA CGAAAGCATC 
ATTCAGGCGT TCAGTCGTAC GAATCGTCTG TTTGGCCCAG ATAAGCCGTT TGGCGTCATC 
CGCTATTACC GTAAGCCGTA CACCATGCAT GGTTTCATCG AGGCAGCTGT GAAACTGTAT 
TCGGGTGATC GACCGCTCGA CCTGTTCGTA CAGAAATTGC CAGCGAATGT GAAATCCATG 
GATACTCGGT ACCGTGAGAT TCTCGACGTA TTCTCAGACA GCGGAGAATC GGACCTTATG 
CAGCTGCCGG AGTCGGTAGA GGCTAGACGT AAGTTTGCCA AGGAGTTCGT GGAACTGAAT 
CGGTACCTTG AAGCGGCGAA AGTGCAGGGC TTTGACTGGA GCACCACGGA ATACAAGGTC 
GATAGCACGG ATACTGACGA TACGAATGAG GACAATGATG AGCATGGCGA GTCTGAAGTG 
GTGCGTCCTC AAATTGACGA ACGTACGTAC CTCATTCTTG CGCAACGCTA TAAAGAACTG 
TTCGATGGCA ATAGCGATCG CGGTAGTGAC CCAGATGATG ATGTGAACGA TAATCCTGAA 
GCGCCATATG AACTGGATGG TTACCTCACC GAAATTGATA CCGGACTCAT CGATACCGAT 
TACATGAATG CCAACTTCGA TAAATGGCTG AAGGCGCTCA AGGAGAATAG CCCGGAGTTG 
GCAGAGATGT CTGCGCAGCT GCACCGGTCC TTTGCCGCGC TCTCGCGGGA TGAACAACGA 
CTCGCTGAAC TGTTCCTGCA TGACGTGGAG CGTGGCGACG TGGAGGTCGA AGCCGGTATG 
ACGCTACGTG ATTACATCAC GCGCTATGCT GCACGCGAGA AGAATGAGCA AGTCGACAAA 
CTGGTCGATC GATTGGGTGT CAACAGATCG GTGGTCGAGG AATTCCTTGC CAAACGTATA 
GACGAGGCGA ACATCAACGA GTTCGGACGT TTCGATGCAC TGCGTTCCTC GCTTGACGTG 
CAACGGGCAA AAGCCTTCTT TGAGCAGCAT GATCACAAGG CATTGCCGGT GTTCAAGGTG 
CGTATGCGCG CCACCAATAT GTTGAAGCGT TTCGTACTCA TGGGCGGATT CGACATCGAT 
GATACCGACA ATACGGATGG ACAAAGCGAG ACGAAGAACG AGCACTAG 

 

Protein sequence

MIFDSESVFE DNVITVLKQH GWKDGVLRYP TEQDLLDNWK GILYRNNNDI DRLGKYPLTD 
GEMAQIIEQI ETLRTPLALN SFVNGRTVSI TRDNKEDVAH FGKEISLYIY DRKEIAGGKS 
TYQIAQQPVY PAKNKMLNSR RGDLVLLING MPLIHIELKK SGIPVSQATN QIEKYTHEGV 
FTGLFRLVQI FVAMNPDDAV YFANPGVDKF NPSYYFHWAD YNNEPICGGQ NPGKDEWKLF 
IGGTSGTAGL LSIPMAHQLI GFYTIADSAD GCLKVLRSYQ YIAANAISDV VRKCDWEQRP 
TTPGRPGGYV WHTTGSGKTM TSFKSAQLIA DSHDADKVVF LMDRIELGTQ SLKEYRSFAD 
SETEVQGTEN TGVLRDKLNS TNVNDTLIVT SIQKMSNVKA GERGVTQAWL DQLAARRIVF 
IVDECHRSTF GDMLQDIRRS FPNALFFGFT GTPILDENQK KNSTTAMVFG RCLHRYSIAD 
GIRDHNVLGF DPYMVTTYKD SEVRRAVALD KAKAESAEDA LADSVKAKVF QHYMDKSEVP 
MGPMVDGAGN RISGIEDFLG RDQYGIDSPH PSMVVSDILE QFPVLSHAGK FHAMLAASSI 
PEAVNYYHLF KQQAPKLHVT ALFDPNIDNN EGATDKEDAL TEIITDYNEA FGKEFVIPTW 
PAMKKDISSR LSHKSPYGGI ATNRSQQLDL LIVVDQMLTG FDSKWVNTLY LDKIIDYESI 
IQAFSRTNRL FGPDKPFGVI RYYRKPYTMH GFIEAAVKLY SGDRPLDLFV QKLPANVKSM 
DTRYREILDV FSDSGESDLM QLPESVEARR KFAKEFVELN RYLEAAKVQG FDWSTTEYKV 
DSTDTDDTNE DNDEHGESEV VRPQIDERTY LILAQRYKEL FDGNSDRGSD PDDDVNDNPE 
APYELDGYLT EIDTGLIDTD YMNANFDKWL KALKENSPEL AEMSAQLHRS FAALSRDEQR 
LAELFLHDVE RGDVEVEAGM TLRDYITRYA AREKNEQVDK LVDRLGVNRS VVEEFLAKRI 
DEANINEFGR FDALRSSLDV QRAKAFFEQH DHKALPVFKV RMRATNMLKR FVLMGGFDID 
DTDNTDGQSE TKNEH