| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BLD_1816 |
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| Symbol | virB4 |
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| ID | 6363100 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Bifidobacterium longum DJO10A |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010816 |
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| Strand | - |
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| Start bp | 2163498 |
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| End bp | 2165504 |
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| Gene Length | 2007 bp |
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| Protein Length | 668 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 642681019 |
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| Product | truncated type IV secretory pathway VirB4 component protein |
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| Protein accession | YP_001955759 |
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| Protein GI | 189440678 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3451] Type IV secretory pathway, VirB4 components |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCTGACA TCAACGGCAG CAAAGCGGTC AAAGGCAACG ACAAGCGACA TGGAAAGGCC
GGAAACCGGC GCTCCGGGAA TCGTCGCATA CCTCGTTCGT CGAAGGAGCT GCTTGGCTAT
GATTCGATGC TGTCCAACGG GATCGCGTAT CTGGGCGGCG ACCGGTGGAG CGTGTCGCTG
CGGATCAGCG ACATCAACTA TCAGGTCGCG ACCCAGGACC AGCAGCTGGA CGTCGTGGAC
CGGTGGGGAC GTTTCCTGAA CTCGGTCGGC GAGAACATGG GTGTCCAGAT CACGGTCGCC
ACACGCATGC TGGATCCCGA GGAGGTGACG CGCAGCATCG CCATGCCCCT ACGGGGCGAC
ATGCTGGATG GGTTGCGCGG GGACTTCAAC CGCAATGTGC GCCGGCGTCT CGCCGGCCGT
TCGCAGGGCG CGGTGACGGA CAAGTATCTG ACGCTGACGC TGCGCGAGCG GGACGGGGAA
CGTGCGGTCA CGCTGCTGAA CCGCGCCGTG CTGCGTGCCA CGGCGCAACT GCGGTCGGTG
GGCGGCTGCG TCGGCGTGCG CCTGGACCGC CGGTCCCGGC TGGAGGTGCT GCACGGGATG
CTGCGTCGCG GCACGCGGTT CATGTTCGAC GAGGACGGCT TCCTGAAATC GCATGGCATG
TCCACGAAGG ATTACGTGGC CCCGTTCGCC GTGGACGTGT CGGACCGCCG GCGGCTCCGG
TTGAGCTCGG GCACCACGGA AGTATGGCAC CAGTGTCTTC TGGTGCGGGA TTTCCCGGAT
TACCTGAGCG ACCAGCTGGT GTCGTCCATC ACGGACATCA AGGCGGATAT CACAGTCGGC
ATCCATCTGT CCCCGCGGGG CAAGGCCGAG GGGCTGAAGC TCGTGAACCG GACGATCGCC
GAGATGGACA TGCAGGCCAT CGACGAGCGG CGCAAGAACC GCAAACAGCA TCTGCCCGAA
GACATGCTGC CTCATGATCT TCAGGAATCC ATGAGCCAGG CGGGCGAGCT GCGCGATGAT
CTGGAGCATA ACGGCGACCG TCTGGTGGAT TCCCTCATGA TCGTGGACGT GTCGGCGGAC
AGTCGTGAGC AACTGGACCA GACGGTCCGT GACGTGACGG CCGCGATCGA TGGGCAGTCG
TGCGTGGCCG AGACCTTGGC CTACATGCAG GTGGAGGGGT TGAACGCCGT GCTGCCATTG
GGCAATCCCC TGCCGCCGAT GCGCCGCACG CTGACCACGT CGAGCGCGGC GATTCTGGTG
CCGTTCACGT CGCAGGAGCT GTTCGAGCCG GGAGGCGTGT TCCATGGAGC GAACGCGCGC
ACCGGCAATC CCGTGGTCAT CGACCGCACG AAAGGCATGA ACGGCAACGG GTTCATCCTG
GGCACGACCG GGTCGGGCAA GAGCCAGGCG GCGAAGAACG AGATCACCCA GATCTATCTG
ACCCGGCCGG ACGACGATCT GATCGTCATC GACCCGGAGC ATGAGTTCAC GCCGTTGTGC
GACGGTCTCG GCGGCGAACG AGTCGAGATT GGGGAATCGT CGCGGGCGCA CATCAACGCG
CTGGACATCG AATATGAAGA CGATTCCGAA GGCGACCCGA TACGGTCGAA ATGCGCGAGC
GTGCTGAACA TGCTCGGCGT GCTGATCGGC GGACAGGACG GCATCGACCG CATGCAGCGC
AGCCTGATCG ACCGCACGGT CATCGGCATG TACCGCGAGG TGAGGGAGCA TCCCGAACTG
GGCATGCCCA CGCTCGCCAC CCTGCACGAC CGCCTCGCCG CTCTGGGCGA GCCGGGGGGC
CGTGACGCGG CGCGCGCGTT GGAGATCTAC GCGACCGGCA GCCTGAACGC CTTCTCCCAT
GCCACCGACG TGGACACGTC CAGCCGGTTC CTCGTCTATG ACGTCTCCGG ACTGGGGGCG
GAGCTGCGCA CGTTCGGCAT GCTCGTCGTC TTGGACCAGA TATGGAACCG GGTCGTCAGG
AACCGACGTC TCGGCCGGCG CACCTAG
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| Protein sequence | MSDINGSKAV KGNDKRHGKA GNRRSGNRRI PRSSKELLGY DSMLSNGIAY LGGDRWSVSL
RISDINYQVA TQDQQLDVVD RWGRFLNSVG ENMGVQITVA TRMLDPEEVT RSIAMPLRGD
MLDGLRGDFN RNVRRRLAGR SQGAVTDKYL TLTLRERDGE RAVTLLNRAV LRATAQLRSV
GGCVGVRLDR RSRLEVLHGM LRRGTRFMFD EDGFLKSHGM STKDYVAPFA VDVSDRRRLR
LSSGTTEVWH QCLLVRDFPD YLSDQLVSSI TDIKADITVG IHLSPRGKAE GLKLVNRTIA
EMDMQAIDER RKNRKQHLPE DMLPHDLQES MSQAGELRDD LEHNGDRLVD SLMIVDVSAD
SREQLDQTVR DVTAAIDGQS CVAETLAYMQ VEGLNAVLPL GNPLPPMRRT LTTSSAAILV
PFTSQELFEP GGVFHGANAR TGNPVVIDRT KGMNGNGFIL GTTGSGKSQA AKNEITQIYL
TRPDDDLIVI DPEHEFTPLC DGLGGERVEI GESSRAHINA LDIEYEDDSE GDPIRSKCAS
VLNMLGVLIG GQDGIDRMQR SLIDRTVIGM YREVREHPEL GMPTLATLHD RLAALGEPGG
RDAARALEIY ATGSLNAFSH ATDVDTSSRF LVYDVSGLGA ELRTFGMLVV LDQIWNRVVR
NRRLGRRT
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