Gene BLD_1572 details

Gene Information

• Locus tag: BLD_1572
• Symbol: rgpF
• ID: 6363950
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Bifidobacterium longum DJO10A
• Kingdom: Bacteria
• Replicon accession: NC_010816
• Strand: +
• Start bp: 1871437
• End bp: 1873437
• Gene Length: 2001 bp
• Protein Length: 666 aa
• Translation table: 11
• GC content: 48%
• IMG OID: 642680763
• Product: lipopolysaccharide biosynthesis protein
• Protein accession: YP_001955515
• Protein GI: 189440434
• COG category: [M] Cell wall/membrane/envelope biogenesis
• COG ID: [COG3754] Lipopolysaccharide biosynthesis protein

Plasmid Coverage information

• Num covering plasmid clones: 5
• Plasmid unclonability p-value: 0.211326
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAGCGTTA ATAGCGGGCA TAAACAGCGA CTGGGTATCT ACTGTTTCTA TGACAAGTAT 
GGTCATGCTG CATCCTTTAT CAAGACCTTT CTTGATGATT TGATGGATAA CTTAGATGAT 
CTAGTCGTAG TTGTAAACGG GCAACTTAGC GATCAGGCTC GTCAACTGTT CTCTGAATAC 
ACGAAGACGA TCATCGTTAG AGAGAATAAA GGACTTGACG TCGCTGCGTA CAAGCAGGCC 
ATTCTCACAC TCGGTTGGGA AAAACTTGAG TCATATGATG AAGTCATTTG CCTGAATGAC 
ACAGTTATGG GACCGGTGTA TCCGTTCCGT GAAATGTTTG CGTGCATGGA TCGCAAGGAT 
GTGGATTTTT GGGGTATCAC TGCGTATGCG GGTGAGACAG TTGATAAGGA GCAGATTCCA 
ACGCATCTTC AGGCCTATTG GCATGCGTAC AGGCGCTCTT TAGTGTCTTC CCCGGCGTTC 
CACGAGTACT GGGAGACCAT GCCTTTGTGG AAAGACTACG CAGAGGTTAC CCGCAAACAC 
GAGATGACCT TCACCAAGCA TTTCACTGAT TTGGGCTTCA CCTGGGCCTC GTACATCGAT 
TGGCGAAAAT ATCAGGGATA TTCTTCATAC CCGTTGCTGT ACATGCCGAT GCAAATCGTG 
CGAGATGATC GATGCCCTAT TTTCAAGCGC CGTTCTTTCT TCGTGGATTA CAGTGCTTAT 
TTCGACCAGA CGGCCGGTCA GCCAGCTCTG GATTTGTACG AGTACCTTCG AGATCATACT 
GACTATGACG TGGATATGAT CTGGGATGCT ATTTTGCCGT CCTACAACAT TGACGATATC 
CGCAAGGCCA TGCATCTTGA TTATGTGCTG CCCTCACAGG CCATCAATCC ACAGACGCAT 
GATCGTCCTC GTTCGGCGTT CATCTATCAC GTCTACTTCA TGGATTTGCT AGAAGACACT 
TGCCACTACA TTGCATCGTT GCCGGAAGAA ACAGATCTAT ACATCACCTC TACCGAAGAT 
AAGATTCCCC AGATTCGGGA ATACATGCAA CAGCATGGGA TTTCTCATCA GGCGACATTC 
ATCCCCGTTA TCAATCGTGG TCGTGATGTC TCGGCTCTGC TTGTGGCCGC TTGCCCGGTG 
GTGTTGAGCG GAAAATATGA CGTCATTGGT TTCGCTCATG ATAAGAAATC CAGTCAGAAT 
CAGGAAAATG GACATCATGG CACCGAGAGC CAAGGATTCG CGTACAAGCT TATGGAGAAT 
ACGCTTGGCA GTGAGGCATA TGTCAAGAAC ATTCTGACGT TATTTGCGGA GAACCCGCGT 
CTTGGTCAGG TGACGCCTCC GCCGCCATAT CACGCTTTGT ACTTTGCGCA CACCATTCCT 
CACGATTGGG GTGCAAATTA TGAGATCACG AAGGAGCTTT TGGAAGACAG GCTGGGCATT 
CATGTGCCGC TCTCTCCCAC TAAGCCAACT GCATCCGCGA TGGGGTCGTG CTATTGGTTC 
CGTGTTGAGG CATTAAAACC GCTGTTCGAG TATGGGTGGA AGTATGAAGA CTTCTTGCCC 
GAAGGACAGA TGGGCGAAGA CGGTACTATT TCGCATGCCA TCGAACGAGC CAACGGATAT 
ATATGCCAAT CGCGTGGATA TTATCCGGCA TGGGTGCTTT CAGATCGATA TGCTCGCATT 
GAAGTGGATT CGTTGTTCTA TACCACTGCC ATGATGATGG GCTCGTCTGC AGAAGCACGT 
AGCGGAGAAT CATTGCTGAC GAATTTGCGT GGTTTGAATT TGGCGACTTC TCGTTGGAGA 
ACACTGAAAA TAGCCAAGCA TCGCACACAT TTAGGACTTC AATGGATCAC GTCACGAACT 
GTGCTTAAGC TTCCTAAGCC AGCACAGAGC GTCATCTACA CTGCAGCATG GGCTCCAATC 
ACCGCGGTAC GATTTGTGAT TGGACAAATC AGGGCGGTGC TTCGTGGTGA TTTCAAGCAC 
AAAAGTGCAC CTAAAAAATA A 

 

Protein sequence

MSVNSGHKQR LGIYCFYDKY GHAASFIKTF LDDLMDNLDD LVVVVNGQLS DQARQLFSEY 
TKTIIVRENK GLDVAAYKQA ILTLGWEKLE SYDEVICLND TVMGPVYPFR EMFACMDRKD 
VDFWGITAYA GETVDKEQIP THLQAYWHAY RRSLVSSPAF HEYWETMPLW KDYAEVTRKH 
EMTFTKHFTD LGFTWASYID WRKYQGYSSY PLLYMPMQIV RDDRCPIFKR RSFFVDYSAY 
FDQTAGQPAL DLYEYLRDHT DYDVDMIWDA ILPSYNIDDI RKAMHLDYVL PSQAINPQTH 
DRPRSAFIYH VYFMDLLEDT CHYIASLPEE TDLYITSTED KIPQIREYMQ QHGISHQATF 
IPVINRGRDV SALLVAACPV VLSGKYDVIG FAHDKKSSQN QENGHHGTES QGFAYKLMEN 
TLGSEAYVKN ILTLFAENPR LGQVTPPPPY HALYFAHTIP HDWGANYEIT KELLEDRLGI 
HVPLSPTKPT ASAMGSCYWF RVEALKPLFE YGWKYEDFLP EGQMGEDGTI SHAIERANGY 
ICQSRGYYPA WVLSDRYARI EVDSLFYTTA MMMGSSAEAR SGESLLTNLR GLNLATSRWR 
TLKIAKHRTH LGLQWITSRT VLKLPKPAQS VIYTAAWAPI TAVRFVIGQI RAVLRGDFKH 
KSAPKK