Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | BLD_1572 |
Symbol | rgpF |
ID | 6363950 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Bifidobacterium longum DJO10A |
Kingdom | Bacteria |
Replicon accession | NC_010816 |
Strand | + |
Start bp | 1871437 |
End bp | 1873437 |
Gene Length | 2001 bp |
Protein Length | 666 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 642680763 |
Product | lipopolysaccharide biosynthesis protein |
Protein accession | YP_001955515 |
Protein GI | 189440434 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3754] Lipopolysaccharide biosynthesis protein |
TIGRFAM ID | |
| ![](https://exploration.weizmann.ac.il/pandatox/images_new/ic_cp.jpg)
![](https://exploration.weizmann.ac.il/pandatox/images_new/ic_hh.jpg)
|
Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.211326 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGAGCGTTA ATAGCGGGCA TAAACAGCGA CTGGGTATCT ACTGTTTCTA TGACAAGTAT GGTCATGCTG CATCCTTTAT CAAGACCTTT CTTGATGATT TGATGGATAA CTTAGATGAT CTAGTCGTAG TTGTAAACGG GCAACTTAGC GATCAGGCTC GTCAACTGTT CTCTGAATAC ACGAAGACGA TCATCGTTAG AGAGAATAAA GGACTTGACG TCGCTGCGTA CAAGCAGGCC ATTCTCACAC TCGGTTGGGA AAAACTTGAG TCATATGATG AAGTCATTTG CCTGAATGAC ACAGTTATGG GACCGGTGTA TCCGTTCCGT GAAATGTTTG CGTGCATGGA TCGCAAGGAT GTGGATTTTT GGGGTATCAC TGCGTATGCG GGTGAGACAG TTGATAAGGA GCAGATTCCA ACGCATCTTC AGGCCTATTG GCATGCGTAC AGGCGCTCTT TAGTGTCTTC CCCGGCGTTC CACGAGTACT GGGAGACCAT GCCTTTGTGG AAAGACTACG CAGAGGTTAC CCGCAAACAC GAGATGACCT TCACCAAGCA TTTCACTGAT TTGGGCTTCA CCTGGGCCTC GTACATCGAT TGGCGAAAAT ATCAGGGATA TTCTTCATAC CCGTTGCTGT ACATGCCGAT GCAAATCGTG CGAGATGATC GATGCCCTAT TTTCAAGCGC CGTTCTTTCT TCGTGGATTA CAGTGCTTAT TTCGACCAGA CGGCCGGTCA GCCAGCTCTG GATTTGTACG AGTACCTTCG AGATCATACT GACTATGACG TGGATATGAT CTGGGATGCT ATTTTGCCGT CCTACAACAT TGACGATATC CGCAAGGCCA TGCATCTTGA TTATGTGCTG CCCTCACAGG CCATCAATCC ACAGACGCAT GATCGTCCTC GTTCGGCGTT CATCTATCAC GTCTACTTCA TGGATTTGCT AGAAGACACT TGCCACTACA TTGCATCGTT GCCGGAAGAA ACAGATCTAT ACATCACCTC TACCGAAGAT AAGATTCCCC AGATTCGGGA ATACATGCAA CAGCATGGGA TTTCTCATCA GGCGACATTC ATCCCCGTTA TCAATCGTGG TCGTGATGTC TCGGCTCTGC TTGTGGCCGC TTGCCCGGTG GTGTTGAGCG GAAAATATGA CGTCATTGGT TTCGCTCATG ATAAGAAATC CAGTCAGAAT CAGGAAAATG GACATCATGG CACCGAGAGC CAAGGATTCG CGTACAAGCT TATGGAGAAT ACGCTTGGCA GTGAGGCATA TGTCAAGAAC ATTCTGACGT TATTTGCGGA GAACCCGCGT CTTGGTCAGG TGACGCCTCC GCCGCCATAT CACGCTTTGT ACTTTGCGCA CACCATTCCT CACGATTGGG GTGCAAATTA TGAGATCACG AAGGAGCTTT TGGAAGACAG GCTGGGCATT CATGTGCCGC TCTCTCCCAC TAAGCCAACT GCATCCGCGA TGGGGTCGTG CTATTGGTTC CGTGTTGAGG CATTAAAACC GCTGTTCGAG TATGGGTGGA AGTATGAAGA CTTCTTGCCC GAAGGACAGA TGGGCGAAGA CGGTACTATT TCGCATGCCA TCGAACGAGC CAACGGATAT ATATGCCAAT CGCGTGGATA TTATCCGGCA TGGGTGCTTT CAGATCGATA TGCTCGCATT GAAGTGGATT CGTTGTTCTA TACCACTGCC ATGATGATGG GCTCGTCTGC AGAAGCACGT AGCGGAGAAT CATTGCTGAC GAATTTGCGT GGTTTGAATT TGGCGACTTC TCGTTGGAGA ACACTGAAAA TAGCCAAGCA TCGCACACAT TTAGGACTTC AATGGATCAC GTCACGAACT GTGCTTAAGC TTCCTAAGCC AGCACAGAGC GTCATCTACA CTGCAGCATG GGCTCCAATC ACCGCGGTAC GATTTGTGAT TGGACAAATC AGGGCGGTGC TTCGTGGTGA TTTCAAGCAC AAAAGTGCAC CTAAAAAATA A
|
Protein sequence | MSVNSGHKQR LGIYCFYDKY GHAASFIKTF LDDLMDNLDD LVVVVNGQLS DQARQLFSEY TKTIIVRENK GLDVAAYKQA ILTLGWEKLE SYDEVICLND TVMGPVYPFR EMFACMDRKD VDFWGITAYA GETVDKEQIP THLQAYWHAY RRSLVSSPAF HEYWETMPLW KDYAEVTRKH EMTFTKHFTD LGFTWASYID WRKYQGYSSY PLLYMPMQIV RDDRCPIFKR RSFFVDYSAY FDQTAGQPAL DLYEYLRDHT DYDVDMIWDA ILPSYNIDDI RKAMHLDYVL PSQAINPQTH DRPRSAFIYH VYFMDLLEDT CHYIASLPEE TDLYITSTED KIPQIREYMQ QHGISHQATF IPVINRGRDV SALLVAACPV VLSGKYDVIG FAHDKKSSQN QENGHHGTES QGFAYKLMEN TLGSEAYVKN ILTLFAENPR LGQVTPPPPY HALYFAHTIP HDWGANYEIT KELLEDRLGI HVPLSPTKPT ASAMGSCYWF RVEALKPLFE YGWKYEDFLP EGQMGEDGTI SHAIERANGY ICQSRGYYPA WVLSDRYARI EVDSLFYTTA MMMGSSAEAR SGESLLTNLR GLNLATSRWR TLKIAKHRTH LGLQWITSRT VLKLPKPAQS VIYTAAWAPI TAVRFVIGQI RAVLRGDFKH KSAPKK
|
| |