| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BLD_1501 |
|---|
| Symbol | |
|---|
| ID | 6363686 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Bifidobacterium longum DJO10A |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010816 |
|---|
| Strand | - |
|---|
| Start bp | 1764402 |
|---|
| End bp | 1767065 |
|---|
| Gene Length | 2664 bp |
|---|
| Protein Length | 887 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 642680691 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001955444 |
|---|
| Protein GI | 189440363 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG1511] Predicted membrane protein |
|---|
| TIGRFAM ID | [TIGR03061] YhgE/Pip N-terminal domain
[TIGR03062] YhgE/Pip C-terminal domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGGTGACGC TCGGCGTAGC AATACTGCCC TCGCTGTACG CATGGTTCAA TATTCTCGCC
AACTGGGATC CCTATTCAGC CACCGGCAAT CTGCAAGTGG CCGTAGCCAA TGAAGACCAA
GGCACCACCA ACGATCTGGT CGGCCATCTC GATGCGGGAC GGCAGGTCGT CAAGAAACTC
AAGCAGAACG ACGAACTCGG CTGGCGCTTC GTAGACAATG AGGAACAGGC CGTACACGGC
GTGGAGACCG GCGAATACTA TGCAGCCATC GTGCTGCCCA AGGATTTCAG CGCCAGCTTG
GTCGAATCGG TGACCGGAAC CTCCAAACAG CCGAAAATCA AGTATTACGT CAATGAGAAG
AAGAACGCGA TCGCGCCGAA AATCACCGAC ACCGGTGCCA CCACCATCGA CGAGCAGATC
AACTCCGCCT TCGTCACCAC GGTAGCCACC ACCGTTGCCT CGGCCGTTTC CGAAGCGGGA
GGCGATCTCG ACCAAGCCAC CGGCAAAGTC CAGCACGATA CGATCAATGA TCTCAATACG
GTGATGTCCA CGCTGAACAC CGTTCAGGAT TCACTCACCG ACTTACAGGA CACGCTGGCC
CAGTCAGACA CGATTCTCGC CGACGCCAAA CAGACCACCG CCTCACTCAG GCAGACCGTC
GCGGCCGCGC AGAAGGCCTC CCGCCAGTCC GGCACACTGT TGGCGGAAAC ACAGGCCGGG
TCACAAGCCT TCTCCACCAC ACTGGTCGGC GCGCTCGACT CCAGTTCAGC ACAACTCTCC
GGACTGGCCG TTCACGTCAA CAACGCCGCC GGCAGCATCA CCGGCTCCTT CAACAGCGCG
CAGAACTCCG TTGACACCAT CACCAACACA CTTTCGGCCC CACTGAATGC CACCCAAACG
TCAATCAGCG ATCTGAAAGA CGCGCTGACC AAAGCCGGCA TCGGCAAAGA CACCACCGAC
CCGGTCGGCC AGAACATCTG GAAACAAATC GATGCGCTCG ACTCATTGAT CAGCAAACAG
CAGACACAGC TCAACACCTT CCATACCGAC ACCACACAGT TCATCAACTC CGGTAAAGAC
GCCACCACGA ATCTTTCCGG AGCCATGACC AACACCACCA CCGGCGGCAT CGCGGCGCTG
AATACCGCGC GCGGCTCGCT GACCGGCACC GTGATGCCGT CGCTCACCTC ATCATTGAAC
AGTTTCGCCG CCCTGAACGG CACGCTGGAT GGCACGTTGA CTTCGTTGTC CGGCACCTTG
GATCAGGCCG ACGGACTGTT CGACCAGCTT GTCGATACCC TGAACCAAAC GAAAACCACC
ATCAGCAGCA CGCAGGATTC GCTGCGCCAG GTGGCCAGCG ATGTCGCCAC CGTACGCACC
GATATCGCCA CGCTCGATAG TTCCGCCGCT TACCAGAAAA TCCGGGATAC GCTGCATCTG
GATGACAAGG GATTCGGCGA GTTCATGGGC AATCCCGTCG CTCTGACCAC GAAAGTCGTG
TATGCCACCG ACAATTACGG GTCCGCAGTC ACCCCGTTCT ACACGAATCT GGCACTGTGG
GTAGGCGGTT TCGTGCTGAT TGCCATCTAC AAGCTTGAGG TCGACCGCGA GGGCATTCGC
CGTATCACCG CTACGCAAGC ATATCTTGGC CGCTGGCTGC TGCTGGTCAC CATCGGATTC
CTGCAAGCCG TCATCGCCAC CATCGGCGAT CTGGTGCTTG GCATCCAATG CGAGCATCCG
CTGCTGTTCA TCTTGGCCGG AATCTTCTGT TCGTTCGTAT ACATCAACAT TATTTACGCA
CTGGCCGTGG CGTTCCGCCA TATCGGCAAA GCCATCGCCG TAATTCTGGT CATTGTGCAG
ATACCCGGTG CCTCCGGCCT GTATCCGATT GAAATGATGC CGAACTTCTT CCGCGAACTG
CACCCGTGGC TGCCCTTTAC CTACGGCATC AACGCGATGC GCGGCCCGAT TGCCGGCCTG
TACGCGAACC ATTACTGGCT CGACATGCTG CACCTGTTCT GGTATCTGCC GGCGGCACTC
TTCGTGGGAC TTGTCATACG CCGGTATGCG ATGAACCTGA ACGCGCTGTT CGACCGTCGT
TTGGGAGATA CCGACCTGAT GATCACCGAG CACAACAGCA TGGTGAACGA ACAGGTGAGC
TTGAACTCCG TATTCCGCAC GGTGTCCGAC AGCAAGGAAC TGCGCGATAT CATCGCCCAT
CGCGCGCACC GGTTCTTCGC ACGGTATCCA AAGATGATCG TTGCCGGTCT GGCATTGCTG
ACCGTACTCC CGTTCGTATT CCTGGTGCTG CTGTTCGTCA CCCAAGAGAA AATCGCCATG
CTGACCTCTT GGATTCTGTC GATTATTCTT ATCGACGCCT ATCTCATTGT GGTTGAATAC
GCACGCGAAG CCTACGCCAT GCAGCTTGGC GTCAGCGCCA TGAGTGCCGA CGAGTTCCGC
AATGTGATGC TCAACGGATA TGTGTGGCGG CGTTTCCACG GCCACGGACG TCACGAAGCG
GCGATGGACA GCGATCCGGA TATCGGCGAA ACCACTGAAC GACTCGCACC GTTCAGTGAT
CAGGTCACCG AGCCGACTGC GCACACCGCA CAGTTCGAGC AGTCCGGTCA GTCTGGGCAG
TCTGGGCAGG GAGGCGCACG ATGA
|
|---|
| Protein sequence | MVTLGVAILP SLYAWFNILA NWDPYSATGN LQVAVANEDQ GTTNDLVGHL DAGRQVVKKL
KQNDELGWRF VDNEEQAVHG VETGEYYAAI VLPKDFSASL VESVTGTSKQ PKIKYYVNEK
KNAIAPKITD TGATTIDEQI NSAFVTTVAT TVASAVSEAG GDLDQATGKV QHDTINDLNT
VMSTLNTVQD SLTDLQDTLA QSDTILADAK QTTASLRQTV AAAQKASRQS GTLLAETQAG
SQAFSTTLVG ALDSSSAQLS GLAVHVNNAA GSITGSFNSA QNSVDTITNT LSAPLNATQT
SISDLKDALT KAGIGKDTTD PVGQNIWKQI DALDSLISKQ QTQLNTFHTD TTQFINSGKD
ATTNLSGAMT NTTTGGIAAL NTARGSLTGT VMPSLTSSLN SFAALNGTLD GTLTSLSGTL
DQADGLFDQL VDTLNQTKTT ISSTQDSLRQ VASDVATVRT DIATLDSSAA YQKIRDTLHL
DDKGFGEFMG NPVALTTKVV YATDNYGSAV TPFYTNLALW VGGFVLIAIY KLEVDREGIR
RITATQAYLG RWLLLVTIGF LQAVIATIGD LVLGIQCEHP LLFILAGIFC SFVYINIIYA
LAVAFRHIGK AIAVILVIVQ IPGASGLYPI EMMPNFFREL HPWLPFTYGI NAMRGPIAGL
YANHYWLDML HLFWYLPAAL FVGLVIRRYA MNLNALFDRR LGDTDLMITE HNSMVNEQVS
LNSVFRTVSD SKELRDIIAH RAHRFFARYP KMIVAGLALL TVLPFVFLVL LFVTQEKIAM
LTSWILSIIL IDAYLIVVEY AREAYAMQLG VSAMSADEFR NVMLNGYVWR RFHGHGRHEA
AMDSDPDIGE TTERLAPFSD QVTEPTAHTA QFEQSGQSGQ SGQGGAR
|
|---|
| |