| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BLD_0889 |
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| Symbol | dxs |
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| ID | 6362872 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Bifidobacterium longum DJO10A |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010816 |
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| Strand | + |
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| Start bp | 1019404 |
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| End bp | 1021593 |
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| Gene Length | 2190 bp |
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| Protein Length | 729 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 642680056 |
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| Product | 1-deoxy-D-xylulose-5-phosphate synthase |
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| Protein accession | YP_001954833 |
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| Protein GI | 189439752 |
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| COG category | [H] Coenzyme transport and metabolism
[I] Lipid transport and metabolism |
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| COG ID | [COG1154] Deoxyxylulose-5-phosphate synthase |
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| TIGRFAM ID | [TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCGCAGCG CGTCAGGAAA CGGATTTGAT TCAAGCGATT CCTTCGCCGT CTCCGGCGCT
GCCGAGAGGA CCGCACGCCT TCACGACATA CCCCCGAGCA TTACCCCTTC CCATGGCGAC
GACTCCCATC TGCTGAGCCG CATTGCCAGC CCGGCCGATG TCAAGGCCCT TGCCCCCAAC
GAGCTCGCCG AACTCTGCCG TGAGATTCGC ACCACGCTGC TGGCATATGG CCACCAACAC
GGCGGTCATA TCGGCTCCAA TCTGGGCATG GTGGAGGCCA CGGTGGCCCT GCACCGCGTA
TTCGATTCGC CGCGTGACCG CATCGTGTTC GATGTATCCC ACCAAAGCTA CGTGCATAAA
ATGCTCACGG GCCGCGCCGC CGCCTATCTG GACCCGGACC GTTTCAGCGA GGTGACCGGC
TTCACCAATC CGGACGAAAG CAAACACGAC CAGTTCGTGC TCGGTCACAC CGGTACCTCG
ATTTCATTGG CTTGCGGTTT GGCGAAAACC CGCGATATGG AAGGCCCGAA CAGCGGCATC
GGCAATGTGA TCGCCGTGAT CGGCGATGGT TCGCTGAGTT CGGGCGTGGC GTTTGAAGGA
CTGAACAACG CGGCTGAGCA GGGCGGCAAT CTCATCATTG TGTTCAACGA CAATGAGATG
TCGATTGCCG GCGATTTCGG TGGCATGTAC GGTCCGCTCG CCCGCCTGCG CGCGTCCGGT
GGCACCGCCC AGCCGAATCT GTTCAACGCG TTTGGCTTGG ATTATCGGTA TGTGGAGGCC
GGCAACGATG TTTCCGCGCT GGTCGCAGCT TTCGAGGAAG TGCGCGATAT CGATCATCCG
GTGGTGGTCC ATATTCATAC GCTGAAGGGC GCAGGATATG ACGGTGAGGA GACTCACGCA
GATCGGCAAA CCGCCTCGGC CTCACCGGTT TCGTTCGACT CCCCCACCGG CGTGCATCCC
ACCGATAACG TGAACCACAG CGAGCCGTGG CATTCGGATC ACTGCAACCT GTCCGATCAT
GAACCGCATG AGGGCCAGTG CGAGGCCTCG CATTGGCAGA ATCCGGATGC CGCAATCGGC
AAGCCGGACG ATCCGCGCAA GCATTACGGC AAAATGGCGA TGGCCGCACT CGAACCGCGT
TTCGCCGCCG AGCCAGGACT CGTGGTCATC TCCCCCGCCA CGCCGGGCTC GAACGGCATC
ACCCATGAGT TCCGAGAGCG CGCGGGCGCA CATTATGTAG ACACGGGCAT CACCGAATCG
CATGCCGTGG CGTACGCTGC CGGCATCGCA CGGGCGGGTG GCACGCCGGT GGTGGCCACC
ACGGCGTCCT TCTTCCAGCG CGCGTACGAC CAGTTCTTCC AGGAGATGAG CCTGAACCGT
TCGCGAGTCA CGGTACTTGA TTTTCTGGGC GGCCTGTCCG GTTCGGACAA TACGCATTCC
GGCGCGTATG ACGTGACGAT GTTCTCCAAT ATTCCAGGGG CTACGATGCT GGTGCCGACT
TCGGCTCGCG ACTATCTAGC TGATCTGGCA TGGGCTACCG CGCCGGCCGG TTCGGCGGAC
GCCCCTGCTG GTCCGGTGGT GATTCGAGTG CCGGGCGAGG CGATTCTGAC GGCGGAACGG
GATGCGACGC TGCTGCCGGT GACGGGTGGG CAGATCGCTG ACCGCCCCCA GTCAACTTCG
CTGCCAGTCT CCGTCAGCTC CGCCAGCGGG GGCATATCTG CCGCAACAGT CCGCGGGACC
GTTAGCGTAA CGGCTCAGCG TGCCGGTGTG CGTCACATGC TGGATTGGCG GGTCAATCAG
ACGGGCTCGC ACGTCGCGAT TATCGGACTG GGCAATGCGT ATCCGTTGGC GGAGCAGACG
GCCGCCGCAT TGTCTGCCGA TTATGGCATC ACGGCAACGG TTATCGACCC GCGCCAGTGC
ACGTCGCTGG ATTCAGACGT ACTGGAGTCG TTGCGTGATG GCCACCAGCA GGTCATCACC
CTTGAAGACG GGCAGCTTGA AGGCGGCTGG GGCGAGAAAG TGACCGCATA CTATGCGAAT
CATCATGTCT CGGACGGCAG CCGTAATCCT CGTGTGCTGA ACTTCGGCGC AGCCAAGGAA
TTTACCGACC GCGTGTCGCT GGGCGAACTG AACGAACGTT ATGGACTAAC GGTGGAGCAG
GTGACAGAGG CGATCACTCG TTGTTTTTGA
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| Protein sequence | MRSASGNGFD SSDSFAVSGA AERTARLHDI PPSITPSHGD DSHLLSRIAS PADVKALAPN
ELAELCREIR TTLLAYGHQH GGHIGSNLGM VEATVALHRV FDSPRDRIVF DVSHQSYVHK
MLTGRAAAYL DPDRFSEVTG FTNPDESKHD QFVLGHTGTS ISLACGLAKT RDMEGPNSGI
GNVIAVIGDG SLSSGVAFEG LNNAAEQGGN LIIVFNDNEM SIAGDFGGMY GPLARLRASG
GTAQPNLFNA FGLDYRYVEA GNDVSALVAA FEEVRDIDHP VVVHIHTLKG AGYDGEETHA
DRQTASASPV SFDSPTGVHP TDNVNHSEPW HSDHCNLSDH EPHEGQCEAS HWQNPDAAIG
KPDDPRKHYG KMAMAALEPR FAAEPGLVVI SPATPGSNGI THEFRERAGA HYVDTGITES
HAVAYAAGIA RAGGTPVVAT TASFFQRAYD QFFQEMSLNR SRVTVLDFLG GLSGSDNTHS
GAYDVTMFSN IPGATMLVPT SARDYLADLA WATAPAGSAD APAGPVVIRV PGEAILTAER
DATLLPVTGG QIADRPQSTS LPVSVSSASG GISAATVRGT VSVTAQRAGV RHMLDWRVNQ
TGSHVAIIGL GNAYPLAEQT AAALSADYGI TATVIDPRQC TSLDSDVLES LRDGHQQVIT
LEDGQLEGGW GEKVTAYYAN HHVSDGSRNP RVLNFGAAKE FTDRVSLGEL NERYGLTVEQ
VTEAITRCF
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