Gene BLD_0402 details

Gene Information

• Locus tag: BLD_0402
• Symbol: def1
• ID: 6364409
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Bifidobacterium longum DJO10A
• Kingdom: Bacteria
• Replicon accession: NC_010816
• Strand: +
• Start bp: 482926
• End bp: 483414
• Gene Length: 489 bp
• Protein Length: 162 aa
• Translation table: 11
• GC content: 63%
• IMG OID: 642679553
• Product: N-formylmethionyl-tRNA deformylase
• Protein accession: YP_001954346
• Protein GI: 189439265
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0242] N-formylmethionyl-tRNA deformylase
• TIGRFAM ID: [TIGR00079] peptide deformylase

Plasmid Coverage information

• Num covering plasmid clones: 6
• Plasmid unclonability p-value: 0.00108273
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGGCCATCC GTGAGATCAG GGTCGTGCCC GACCCAGTCC TGCGCACCCC CTGCGATGAG 
ATCAAGGAAA TCACCCCGGC CGTGCGCCGC CTGGTTGACG ACCTGTTGGA AACCGTGGAC 
GATCCGGGCC GAGCGGGCCT GTCCGCCAAC CAGATCGGCG TGAGCCTGAG GGCCTTCTCC 
TACAACATCG ACGGCAAAGT CGGCTACGTT CTGAACCCCG TACTCGAGGA GAAGTCCGGC 
GAGCAGTATG GCGATGAAGG TTGTCTGTCC GTGCCCGGCT TGTGGTATAA GACCCGTCGT 
GCCGACTACG CTCGCGTGCG TGGCATCGAC TTGGACGGCA ACGAGGTCGT GCTCGAGGGC 
TCCGGGCTGA TGGGCCGTAT GCTTCAGCAC GAATGCGACC ACCTCGACGG CCACGTGTAT 
TTGGATCGCC TGGAAAAGGA AGAACGCCGC GAAGCCCTGC GCTACATGCG TAATCGTCAG 
GCGAAGTAG 

 

Protein sequence

MAIREIRVVP DPVLRTPCDE IKEITPAVRR LVDDLLETVD DPGRAGLSAN QIGVSLRAFS 
YNIDGKVGYV LNPVLEEKSG EQYGDEGCLS VPGLWYKTRR ADYARVRGID LDGNEVVLEG 
SGLMGRMLQH ECDHLDGHVY LDRLEKEERR EALRYMRNRQ AK