Gene BLD_0115 details

Gene Information

• Locus tag: BLD_0115
• Symbol: dxr
• ID: 6362709
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Bifidobacterium longum DJO10A
• Kingdom: Bacteria
• Replicon accession: NC_010816
• Strand: +
• Start bp: 135639
• End bp: 136829
• Gene Length: 1191 bp
• Protein Length: 396 aa
• Translation table: 11
• GC content: 62%
• IMG OID: 642679255
• Product: 1-deoxy-D-xylulose 5-phosphate reductoisomerase
• Protein accession: YP_001954059
• Protein GI: 189438978
• COG category: [I] Lipid transport and metabolism
• COG ID: [COG0743] 1-deoxy-D-xylulose 5-phosphate reductoisomerase
• TIGRFAM ID: [TIGR00243] 1-deoxy-D-xylulose 5-phosphate reductoisomerase

Plasmid Coverage information

• Num covering plasmid clones: 17
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGAGCATAG CCTCCAACTC CACTGTCATC ATTCTCGGAT CCACCGGATC CATCGGCACC 
CAAGGACTTG ACGTCATCTC GCGTCATCCT GAACGATTTA CCGTCACCGG TCTGGCGGCG 
GGCGGAGCAC ATATCGAGCT GCTGGCGCAA CAGGCCGCAC AGTTCCATGT GTCCGAAGCC 
GCGGTGTTTG ATGAGACCAA GGTTCCAGCG CTGCAAGCAG CTCTCGCACA GGCCGGCGCA 
CAAGGTGTCC GCGTGACCGG CGGTCCGGAT TCGGTCATCG CCATGGCCGG CTCCGGTGCG 
AATGTCGTAT TGAACGGCAT CACCGGCTCC ATCGGCCTCG AACCGTCGAT CGCGGCGCTC 
AAGGCCGGTT CCCAGCTGGC ATTGGCCAAC AAGGAGTCCG TAGTCGCGGG CGGGCATCTG 
CTGTTCAGCG CGCAAGTGCG CGAGAACCAA ATCAACCCGG TCGATTCCGA GCATTCCGCC 
ATCTGGCAAT CCCTGCGCTC CGGAACCCAC GCCGAAGTCG CCAAGCTTGT GGTCACCGCC 
TCCGGCGGAC CGTTCCGCGG CTGGAAACGT GCCGACATGG AGAACATCAC TCCCGAGCAG 
GCGCTGCATC ATCCGACGTG GAACATGGGG CCGGTTGTCA CCATCAACTC CTCCACACTG 
ATGAACAAGG GCCTCGAAGT CATCGAGGCG TCCCGCTTGT TCAACGTGCC GCCTGAACGC 
ATCGACGTGA CCGTGCACCC GCAGTCCATC GTCCATTCCA TGGTTGAATT TGTGGACGGC 
GCCACGATTT GCCAAGCTTC GCCGCCAGAC ATGCGTCTGC CCATCGCGCT GGGTCTGTCC 
GCGCCGGACC GCATGACCAA TGTGGCCGCC GCGTGCGACT GGACGCAAGC CGCAACTTGG 
ACCTTTGAAC CGTTGGACGA TGAGGCGTTC CCTGCCGTGC AACTGGCCCG CCACTGCCTG 
GCCGCCTCCG AGAAGCATAC GGCGGTGCTC AATGCTGCCA ATGAACAGGC CGTGCATGCC 
TTCCTCGAGC ATCGTCTGCC ATACCTCGGC ATCGTGGACA CGGTCAAAGC CGTGCTGGAC 
CAGATGGACG CCGAGCTTCG TGGTAACCCG CTGTTCACGG ACGTGGAGGA AATGAACCAG 
CTTGAGCTTG AAGCCCGCCG ACGCGCCGAC GACCTGATAA ACAAGCAATG A 

 

Protein sequence

MSIASNSTVI ILGSTGSIGT QGLDVISRHP ERFTVTGLAA GGAHIELLAQ QAAQFHVSEA 
AVFDETKVPA LQAALAQAGA QGVRVTGGPD SVIAMAGSGA NVVLNGITGS IGLEPSIAAL 
KAGSQLALAN KESVVAGGHL LFSAQVRENQ INPVDSEHSA IWQSLRSGTH AEVAKLVVTA 
SGGPFRGWKR ADMENITPEQ ALHHPTWNMG PVVTINSSTL MNKGLEVIEA SRLFNVPPER 
IDVTVHPQSI VHSMVEFVDG ATICQASPPD MRLPIALGLS APDRMTNVAA ACDWTQAATW 
TFEPLDDEAF PAVQLARHCL AASEKHTAVL NAANEQAVHA FLEHRLPYLG IVDTVKAVLD 
QMDAELRGNP LFTDVEEMNQ LELEARRRAD DLINKQ