| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BLD_0105 |
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| Symbol | dapF |
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| ID | 6364540 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Bifidobacterium longum DJO10A |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010816 |
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| Strand | + |
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| Start bp | 123542 |
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| End bp | 124435 |
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| Gene Length | 894 bp |
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| Protein Length | 297 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 642679244 |
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| Product | diaminopimelate epimerase |
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| Protein accession | YP_001954049 |
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| Protein GI | 189438968 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0253] Diaminopimelate epimerase |
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| TIGRFAM ID | [TIGR00652] diaminopimelate epimerase |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGTCTTC CGCAACGAGT AACCAAGACA CACGCAACCG GCAATGATTT CGTGGTATAC
CTCGACAAGT CCGGCAAATT CGAGCCTACC GCCGATGAGG TCCGATTCCT GTGCGACCGT
CACTTCGGCA TTGGCGGTGA CGGCCTGATT CGCCTGACAC GGCCTGATTT CGTGTCTGAT
TTAAGCGATG ATCAGCTTTC GGACGTACTG GCCGGGGGCA CGAAATGGTT CATGGACTAT
CGCAATGCGG ATGGATCGTT GGCGGAGATG TGCGGCAACG GTACACGCGC CATCACCTTG
TTCGCTCAGC GTGAGGGTGT GGCCGACTCC ACCGAGCCGT TCCGCCTCGG CACCCGTGCC
GGCGTCAAGA TTCTGACGCC ACGCGGCAAT ATGAGGCCGT ACGGAGCCAA CGTGTTCCAG
GTCGAAATGG GGGAGTGGAA GATCGGCGAA ACCGACGCCT ACGAGGTCAC CATCCCCGGC
ACTGAGGGCT CGGCGCGCGG TACGTTCGTG GATATGGGCA ACCCGCATGT GGTCGCGGTG
ATCGAGGATG CCTTCGCGTC CCTGCCAGTG GTTGAATCAC TGGATTTGGT CACCAAACCA
GTGGTGGCTC CGGTCATCGA ATCCGACCAG AACGTGGAAT TCGTGCGGGT CGACGACATC
GACCAGAACA CCGGCGTGGG TGAAGCCACG ATGCGCGTCA ACGAACGTGG CTGCGGCGAA
ACCCTGTCCT GCGGCACCGG CCTGTGCGCC ACAGGCATTG TGCTGCGGGC CAAGACCGGC
ATCAGCCACT GGGACATCAC CGTACGTGGC GGTACCCTGC GCGTGGACGT CACCGACAGC
GACGTAAAGC TGACCGGAGC AGCCACGCTG GTCGCCGATA TCGATTTGTT GTAA
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| Protein sequence | MSLPQRVTKT HATGNDFVVY LDKSGKFEPT ADEVRFLCDR HFGIGGDGLI RLTRPDFVSD
LSDDQLSDVL AGGTKWFMDY RNADGSLAEM CGNGTRAITL FAQREGVADS TEPFRLGTRA
GVKILTPRGN MRPYGANVFQ VEMGEWKIGE TDAYEVTIPG TEGSARGTFV DMGNPHVVAV
IEDAFASLPV VESLDLVTKP VVAPVIESDQ NVEFVRVDDI DQNTGVGEAT MRVNERGCGE
TLSCGTGLCA TGIVLRAKTG ISHWDITVRG GTLRVDVTDS DVKLTGAATL VADIDLL
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