| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BCZK5140 |
|---|
| Symbol | opuD |
|---|
| ID | 3023901 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Bacillus cereus E33L |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_006274 |
|---|
| Strand | - |
|---|
| Start bp | 5254398 |
|---|
| End bp | 5255966 |
|---|
| Gene Length | 1569 bp |
|---|
| Protein Length | 522 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 38% |
|---|
| IMG OID | 637549371 |
|---|
| Product | BCCT family osmoprotectant transporter |
|---|
| Protein accession | YP_086708 |
|---|
| Protein GI | 52145251 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1292] Choline-glycine betaine transporter |
|---|
| TIGRFAM ID | [TIGR00842] choline/carnitine/betaine transport |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 34 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGGATGA AGAGTCGGAA AACGGATTGG TCTGTATTTC TTATTAGTGG TGGCTCACTT
TTATTATTTG TAATTGCGGT TTTTTTAAAT AAAAGTTACG TAGAGGGAGT CATTAATAGC
AGTTTTGCAG CTTCAATTAA ATACTTTGGT GCTTTTTGGC AGATTTTATT AATTGGTACA
TTTGTTGTTG CAATGTGTAT GGCGTTCTCA AAGTATGGGA GAGTTAAACT TGGGGGATTA
GAAAAACCTG AGATTAGTAC GACGAAATGG CTCGCTATTA TAATGTCTAC ATTACTGGCC
GGAGGTGGTG TTTTCTGGGC AGCGGCAGAG CCGATGTACC ATTTAATGAC GGTGCCACCA
ATACATGAAG GTATAACTGC TGGAACGAAA GAAGCAGTAA TGCCTGCTTT AGCACAAAGT
TATATGCACT GGGGTTTCCT AGCTTGGACG ATTTTAGGGA CAATTAGTGC GGTAGTTATG
ATGTATGGGC ATTATCATAA AGGTATGCCG TTAAAACCTC GAACGCTTTT ATATCCTATT
TTTGGAGAGA AATTGCGAAA GAGTTGGCTT GGAACACTAA TTGATACATT TGCCATTATT
GCAGTAGCTG CAGGGACGAT TGGTCCAATC GGATTTTTAG GTCTACAAGC AAGTTATGGC
CTACAAGCAT TGTTTAACAT CCCGGATGTG TTTACAACTC AATTAGCCAT TATTGTTTGT
GTAGTAGCTG TTTCTACTAT ATCTGCGGTG ACTGGTATTG ATAAAGGGAT TCAAATTATA
AGTAATTTAA ATGTTAGATT GGCAATTTTA TTAATGGTAT TCGTATTACT ATTTGGACCA
GGTGGATTTA TTATTGATTC GTTTGTATCT TCGTTTGGAT TTTATATAAA TGAATTTATT
CCAATGAGCA CATACCGCGG TGATACAGGT TGGTTAGGAT CGTGGACAAT CTTTTTCTGG
GGATGGTTTA TTGGATATGG ACCGATGATG GCAATTTTAG TGAGCCGCAT TTCAAGAGGA
AGAACAATTC GAGAAATCAT CGTTGCAATT GGAATTATTG CACCTATTAT TACAACGTTT
TGGTTTACTA TACTAGGGGG ATCAGGTGTG TTTTATGAGT TAATGAATCC TGGTTCTATA
TCGACCGCAT TAAGTGCATC TGGTATGCCG GCAGCTATGA TTGCAATTAC AGAGCAACTG
CCACTTTCTC ATATTATTGG ACCTGCATTT CTTTTATTAA CAATTTTATT TGTAGTGACA
ACAGGAGATT CAATGGCGTA TTCGATTTCA ATGGCAGTAA CTGGAGATGG GGATCCTAGA
ATTAGTTTGC GAGTTTTTTG GTCGCTTATT ATGGGAACCG TTGCAGCGAT TCTTTTATAC
ATGGGTGAGG GTAGTATTAA TGCATTACAA TCATTCATCG TAGTAACAGC TGTCCCAGTA
TCCATTCTGT TATTCCCAAT GCTATGGCTA GCGCCAAAAG TTGCGGGGGA ATTAGCTTTA
AAGCAAGGTA TTGTAAAAGA AGAAGAGAAA ACCTCCTTCT TGTTCCAAAA AGCTAGTAAA
TTAAAGTAA
|
|---|
| Protein sequence | MRMKSRKTDW SVFLISGGSL LLFVIAVFLN KSYVEGVINS SFAASIKYFG AFWQILLIGT
FVVAMCMAFS KYGRVKLGGL EKPEISTTKW LAIIMSTLLA GGGVFWAAAE PMYHLMTVPP
IHEGITAGTK EAVMPALAQS YMHWGFLAWT ILGTISAVVM MYGHYHKGMP LKPRTLLYPI
FGEKLRKSWL GTLIDTFAII AVAAGTIGPI GFLGLQASYG LQALFNIPDV FTTQLAIIVC
VVAVSTISAV TGIDKGIQII SNLNVRLAIL LMVFVLLFGP GGFIIDSFVS SFGFYINEFI
PMSTYRGDTG WLGSWTIFFW GWFIGYGPMM AILVSRISRG RTIREIIVAI GIIAPIITTF
WFTILGGSGV FYELMNPGSI STALSASGMP AAMIAITEQL PLSHIIGPAF LLLTILFVVT
TGDSMAYSIS MAVTGDGDPR ISLRVFWSLI MGTVAAILLY MGEGSINALQ SFIVVTAVPV
SILLFPMLWL APKVAGELAL KQGIVKEEEK TSFLFQKASK LK
|
|---|
| |